Wall clock time and date at job start Sun Mar 29 2020 21:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46905 * 239.99918 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46641 * 120.00003 * 3 2 1 7 7 C 1.37878 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47080 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47372 * 179.97438 * 10 9 7 12 12 C 1.34230 * 117.00173 * 180.02562 * 11 10 9 13 13 O 1.20818 * 119.99983 * 0.27497 * 12 11 10 14 14 C 1.50706 * 119.99763 * 179.97438 * 12 11 10 15 15 C 1.53835 * 113.66023 * 278.99906 * 14 12 11 16 16 C 1.51773 * 86.69088 * 220.76551 * 15 14 12 17 17 O 1.20754 * 135.75300 * 205.16000 * 16 15 14 18 18 C 1.51584 * 88.46767 * 25.07820 * 16 15 14 19 19 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47617 * 59.99861 * 9 7 2 21 21 H 1.08998 * 109.47222 * 299.99682 * 9 7 2 22 22 H 1.09003 * 109.46945 * 60.00328 * 10 9 7 23 23 H 1.08998 * 109.47020 * 300.00034 * 10 9 7 24 24 H 1.08998 * 112.88302 * 50.33685 * 14 12 11 25 25 H 1.09007 * 113.66185 * 335.19691 * 15 14 12 26 26 H 1.08996 * 113.67039 * 106.26571 * 15 14 12 27 27 H 1.09002 * 113.66881 * 220.46491 * 18 16 15 28 28 H 1.09002 * 113.67004 * 89.38896 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0018 13 8 3.4568 -5.9821 0.0068 14 6 1.5661 -7.3881 0.0030 15 6 1.0898 -7.8370 1.3952 16 6 1.5745 -9.2246 1.0167 17 8 1.3053 -10.3547 1.3463 18 6 2.5409 -8.5776 0.0445 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8719 -3.6044 0.8906 23 1 2.8719 -3.6044 -0.8894 24 1 0.8023 -7.4753 -0.7697 25 1 1.6494 -7.3867 2.2152 26 1 0.0103 -7.7713 1.5307 27 1 2.6264 -9.1065 -0.9048 28 1 3.5081 -8.3354 0.4849 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308402501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:27 Heat of formation + Delta-G solvation = -110.279640 kcal Electronic energy + Delta-G solvation = -13331.454953 eV Core-core repulsion = 10734.401003 eV Total energy + Delta-G solvation = -2597.053950 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.82555 -39.39174 -36.75182 -35.74667 -33.38686 -30.38436 -26.55700 -26.36461 -24.56354 -21.18741 -20.51290 -19.20532 -17.77878 -16.60035 -16.37199 -16.11675 -15.75559 -15.32835 -14.66196 -14.28266 -13.65293 -13.09842 -12.91629 -12.47447 -12.36698 -11.68004 -11.56627 -11.26477 -11.10047 -10.78877 -10.73607 -10.31768 -9.73353 -9.71623 -9.66223 -9.35764 -8.47966 -6.14148 -4.18966 1.54542 2.36750 3.03224 3.27449 3.31829 3.34950 3.54718 4.02707 4.35748 4.41378 4.68949 4.88939 5.15449 5.22272 5.22398 5.37730 5.50852 5.73565 6.01335 6.02138 6.57150 6.88541 7.14581 7.50169 7.56914 7.81601 8.08555 8.19804 8.86391 9.45710 10.97255 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.087017 B = 0.005009 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.700504 B = 5588.179809 C = 5787.254219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.352 6.352 12 C 0.469 3.531 13 O -0.514 6.514 14 C -0.102 4.102 15 C -0.175 4.175 16 C 0.365 3.635 17 O -0.423 6.423 18 C -0.173 4.173 19 H 0.264 0.736 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 -13.534 0.527 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.268 6.268 12 C 0.312 3.688 13 O -0.403 6.403 14 C -0.122 4.122 15 C -0.212 4.212 16 C 0.238 3.762 17 O -0.294 6.294 18 C -0.210 4.210 19 H 0.074 0.926 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.151 0.849 25 H 0.142 0.858 26 H 0.127 0.873 27 H 0.121 0.879 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.023 -13.947 0.708 14.111 hybrid contribution 0.550 1.224 -0.134 1.349 sum 2.574 -12.723 0.574 12.994 Atomic orbital electron populations 1.69962 1.06098 1.27166 1.49589 1.24985 0.94926 0.99406 0.94803 0.86522 0.79483 0.82439 0.78796 1.20054 1.21097 1.20055 1.20937 0.93145 0.90123 1.52466 0.92297 1.19168 0.94173 0.88989 0.98916 1.23694 0.96424 0.78682 1.01039 1.86533 1.42350 1.15777 1.82167 1.22939 0.86266 0.86849 0.72778 1.90636 1.15659 1.88166 1.45854 1.22038 1.00047 0.89481 1.00600 1.24030 1.05027 0.95084 0.97089 1.25564 0.81713 0.88939 0.79990 1.90435 1.59893 1.23411 1.55671 1.24043 1.00668 0.94258 1.02035 0.92606 0.95332 0.95316 0.92212 0.92191 0.84928 0.85787 0.87330 0.87926 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 15 10 C 0.07 1.58 5.40 37.16 0.20 1.78 15 11 O -0.35 -6.56 10.22 -39.26 -0.40 -6.96 15 12 C 0.47 7.29 7.49 36.01 0.27 7.56 15 13 O -0.51 -9.20 15.66 -18.74 -0.29 -9.49 15 14 C -0.10 -1.07 4.28 -90.98 -0.39 -1.46 15 15 C -0.17 -1.59 7.62 -26.92 -0.21 -1.79 15 16 C 0.36 3.63 9.14 -28.16 -0.26 3.38 15 17 O -0.42 -5.54 17.99 6.00 0.11 -5.43 15 18 C -0.17 -1.57 7.38 -27.01 -0.20 -1.77 15 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 1.26 8.13 -51.93 -0.42 0.83 15 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.13 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.12 1.09 8.09 -51.93 -0.42 0.67 15 26 H 0.11 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.13 1.26 7.44 -51.93 -0.39 0.88 15 LS Contribution 257.80 15.07 3.88 3.88 Total: -1.00 -31.45 257.80 -5.43 -36.88 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: -3.31 Total: -4.57 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.14 Total: -5.13 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.74 Total: -25.26 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.59 Total: -21.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.45 -5.43 -36.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308402501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.398 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds