Wall clock time and date at job start Sun Mar 29 2020 21:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46905 * 239.99918 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46641 * 120.00003 * 3 2 1 7 7 C 1.37878 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47080 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47372 * 179.97438 * 10 9 7 12 12 C 1.34230 * 117.00173 * 180.02562 * 11 10 9 13 13 O 1.20818 * 119.99983 * 0.27497 * 12 11 10 14 14 C 1.50706 * 119.99763 * 179.97438 * 12 11 10 15 15 C 1.53835 * 113.66023 * 278.99906 * 14 12 11 16 16 C 1.51773 * 86.69088 * 220.76551 * 15 14 12 17 17 O 1.20754 * 135.75300 * 205.16000 * 16 15 14 18 18 C 1.51584 * 88.46767 * 25.07820 * 16 15 14 19 19 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47617 * 59.99861 * 9 7 2 21 21 H 1.08998 * 109.47222 * 299.99682 * 9 7 2 22 22 H 1.09003 * 109.46945 * 60.00328 * 10 9 7 23 23 H 1.08998 * 109.47020 * 300.00034 * 10 9 7 24 24 H 1.08998 * 112.88302 * 50.33685 * 14 12 11 25 25 H 1.09007 * 113.66185 * 335.19691 * 15 14 12 26 26 H 1.08996 * 113.67039 * 106.26571 * 15 14 12 27 27 H 1.09002 * 113.66881 * 220.46491 * 18 16 15 28 28 H 1.09002 * 113.67004 * 89.38896 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0018 13 8 3.4568 -5.9821 0.0068 14 6 1.5661 -7.3881 0.0030 15 6 1.0898 -7.8370 1.3952 16 6 1.5745 -9.2246 1.0167 17 8 1.3053 -10.3547 1.3463 18 6 2.5409 -8.5776 0.0445 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8719 -3.6044 0.8906 23 1 2.8719 -3.6044 -0.8894 24 1 0.8023 -7.4753 -0.7697 25 1 1.6494 -7.3867 2.2152 26 1 0.0103 -7.7713 1.5307 27 1 2.6264 -9.1065 -0.9048 28 1 3.5081 -8.3354 0.4849 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308402501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:27 Heat of formation + Delta-G solvation = -129.505858 kcal Electronic energy + Delta-G solvation = -13332.288664 eV Core-core repulsion = 10734.401003 eV Total energy + Delta-G solvation = -2597.887661 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93509 -40.50528 -37.99164 -36.90262 -35.43578 -32.34056 -27.90315 -27.17065 -26.24033 -23.01361 -21.82367 -20.03270 -19.13322 -18.28187 -17.69653 -17.52879 -16.79342 -16.54081 -16.28060 -15.47459 -15.10907 -14.40154 -14.36729 -13.80615 -13.60539 -13.11776 -13.00211 -12.67022 -12.57600 -12.44524 -12.31064 -11.81069 -11.51415 -11.45634 -11.30313 -10.60077 -10.53598 -8.26579 -6.39683 0.73134 1.12541 1.41849 1.45035 1.52883 1.77065 2.40548 2.73222 3.08014 3.19209 3.63254 3.77150 3.97444 4.13213 4.25101 4.28372 4.51012 4.68366 4.72292 4.82592 4.97923 5.28239 5.48417 5.56090 5.75715 6.07269 6.35411 6.70953 6.75690 7.30236 8.85669 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.087017 B = 0.005009 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.700504 B = 5588.179809 C = 5787.254219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.089 3.911 11 O -0.362 6.362 12 C 0.469 3.531 13 O -0.537 6.537 14 C -0.098 4.098 15 C -0.170 4.170 16 C 0.377 3.623 17 O -0.455 6.455 18 C -0.164 4.164 19 H 0.268 0.732 20 H 0.006 0.994 21 H 0.007 0.993 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.159 0.841 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -13.764 0.389 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.016 3.984 11 O -0.278 6.278 12 C 0.314 3.686 13 O -0.428 6.428 14 C -0.117 4.117 15 C -0.207 4.207 16 C 0.252 3.748 17 O -0.328 6.328 18 C -0.201 4.201 19 H 0.077 0.923 20 H 0.025 0.975 21 H 0.026 0.974 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.177 0.823 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.678 -14.194 0.568 14.455 hybrid contribution 0.340 1.228 -0.090 1.278 sum 3.018 -12.965 0.479 13.321 Atomic orbital electron populations 1.70084 1.07788 1.28327 1.50379 1.25949 0.95822 1.03370 0.94120 0.85400 0.78206 0.77556 0.79302 1.19081 1.20576 1.19067 1.21367 0.93727 0.91329 1.52503 0.91671 1.18978 0.94387 0.90632 0.96745 1.23165 0.94987 0.79128 1.01093 1.86523 1.42610 1.15809 1.82842 1.23885 0.86168 0.87258 0.71338 1.90628 1.16870 1.88409 1.46851 1.22224 1.00819 0.86297 1.02326 1.24081 1.06180 0.94101 0.96366 1.25567 0.81257 0.88497 0.79445 1.90438 1.60961 1.24621 1.56800 1.24040 1.00012 0.93220 1.02862 0.92347 0.97516 0.97424 0.92045 0.92136 0.82331 0.85394 0.85732 0.85845 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 15 2 C 0.01 0.36 5.46 84.65 0.46 0.82 15 3 Si 0.97 42.85 29.54 68.60 2.03 44.88 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 7 C -0.55 -30.61 9.11 25.60 0.23 -30.38 15 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 15 9 C 0.03 1.55 5.35 29.85 0.16 1.71 15 10 C 0.09 3.81 5.40 71.98 0.39 4.20 15 11 O -0.36 -13.21 10.22 -51.41 -0.53 -13.74 15 12 C 0.47 13.88 7.49 71.24 0.53 14.42 15 13 O -0.54 -18.59 15.66 21.99 0.34 -18.24 15 14 C -0.10 -1.79 4.28 -11.03 -0.05 -1.84 15 15 C -0.17 -2.69 7.62 30.47 0.23 -2.46 15 16 C 0.38 6.70 9.14 29.67 0.27 6.97 15 17 O -0.46 -11.23 17.99 -1.43 -0.03 -11.26 15 18 C -0.16 -2.57 7.38 30.41 0.22 -2.34 15 19 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 20 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 21 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 22 H 0.06 2.57 8.13 -2.39 -0.02 2.55 15 23 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.16 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.13 2.00 8.09 -2.38 -0.02 1.98 15 26 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.12 1.47 8.14 -2.39 -0.02 1.45 15 28 H 0.13 2.21 7.44 -2.39 -0.02 2.19 15 Total: -1.00 -67.23 257.80 5.72 -61.51 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: 1.15 Total: 0.15 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 2.46 Total: -8.89 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.28 Total: -54.40 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.21 Total: -43.24 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -67.23 5.72 -61.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308402501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.992 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds