Wall clock time and date at job start Sun Mar 29 2020 21:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36943 * 119.99977 * 2 1 4 4 H 1.08003 * 119.99753 * 202.34665 * 3 2 1 5 5 C 1.38811 * 119.99846 * 22.34272 * 3 2 1 6 6 N 1.31613 * 119.99877 * 11.35612 * 5 3 2 7 7 Si 1.86801 * 119.99666 * 191.35659 * 5 3 2 8 8 H 1.48497 * 109.47060 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47139 * 119.99988 * 7 5 3 10 10 H 1.48502 * 109.46695 * 239.99842 * 7 5 3 11 11 C 1.46504 * 120.00247 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47257 * 270.00041 * 11 2 1 13 13 C 1.53000 * 109.46911 * 179.97438 * 12 11 2 14 14 C 1.52999 * 109.46911 * 180.02562 * 13 12 11 15 15 C 1.54965 * 110.92299 * 71.54273 * 14 13 12 16 16 C 1.54267 * 104.16116 * 156.29530 * 15 14 13 17 17 C 1.53872 * 106.63914 * 336.44703 * 16 15 14 18 18 C 1.54271 * 106.59882 * 359.97252 * 17 16 15 19 19 H 1.09003 * 109.47388 * 274.20860 * 1 2 3 20 20 H 1.09000 * 109.47229 * 34.21215 * 1 2 3 21 21 H 1.09002 * 109.47073 * 154.21029 * 1 2 3 22 22 H 0.97008 * 120.00169 * 180.02562 * 6 5 3 23 23 H 1.09006 * 109.46851 * 149.99666 * 11 2 1 24 24 H 1.09000 * 109.46893 * 30.00049 * 11 2 1 25 25 H 1.08997 * 109.46762 * 59.99685 * 12 11 2 26 26 H 1.09000 * 109.47176 * 299.99835 * 12 11 2 27 27 H 1.09005 * 109.47146 * 60.00564 * 13 12 11 28 28 H 1.09000 * 109.47288 * 300.00038 * 13 12 11 29 29 H 1.09002 * 110.67292 * 308.23767 * 14 13 12 30 30 H 1.09000 * 110.48014 * 37.63885 * 15 14 13 31 31 H 1.09006 * 110.52780 * 274.97430 * 15 14 13 32 32 H 1.08994 * 110.03325 * 217.13478 * 16 15 14 33 33 H 1.09000 * 110.03328 * 95.75179 * 16 15 14 34 34 H 1.08996 * 110.03573 * 119.26305 * 17 16 15 35 35 H 1.09001 * 110.03068 * 240.64586 * 17 16 15 36 36 H 1.09003 * 110.48129 * 142.29389 * 18 17 16 37 37 H 1.08997 * 110.48668 * 264.80036 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3842 2.2690 1.0936 7 14 2.3365 4.0048 0.1683 8 1 3.6141 3.8167 -0.5647 9 1 1.4265 4.8615 -0.6337 10 1 2.6072 4.6572 1.4746 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2170 -3.0351 1.4437 14 6 3.4715 -3.4765 2.8864 15 6 2.1583 -3.9479 3.5607 16 6 2.6299 -4.8874 4.6897 17 6 4.0243 -5.3971 4.2852 18 6 4.3520 -4.7502 2.9235 19 1 -0.3634 0.0754 1.0249 20 1 -0.3634 0.8498 -0.5778 21 1 -0.3633 -0.9253 -0.4471 22 1 -0.0465 3.0776 1.4127 23 1 3.1499 -1.1385 -0.5134 24 1 1.6084 -2.0286 -0.5129 25 1 1.5001 -1.8399 1.9571 26 1 3.0416 -0.9499 1.9568 27 1 4.1695 -2.9053 0.9298 28 1 2.6276 -3.7948 0.9304 29 1 3.9319 -2.6717 3.4595 30 1 1.5368 -4.4899 2.8479 31 1 1.6143 -3.0983 3.9737 32 1 1.9406 -5.7257 4.7903 33 1 2.6910 -4.3397 5.6302 34 1 4.7621 -5.0961 5.0288 35 1 4.0118 -6.4828 4.1901 36 1 5.4081 -4.4856 2.8713 37 1 4.0875 -5.4232 2.1080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308407283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:02 Heat of formation + Delta-G solvation = -13.312267 kcal Electronic energy + Delta-G solvation = -14203.785882 eV Core-core repulsion = 11980.321604 eV Total energy + Delta-G solvation = -2223.464278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.30992 -35.78433 -33.09203 -30.85915 -28.64164 -28.12341 -25.78656 -24.54249 -21.80359 -20.39874 -19.75173 -19.61364 -16.62700 -15.73513 -15.00957 -14.57118 -14.32402 -13.53365 -13.32634 -13.23111 -12.71828 -12.43106 -11.64590 -11.53920 -11.24480 -11.00300 -10.91798 -10.79875 -10.74445 -10.45261 -10.38776 -10.30998 -10.22246 -10.10326 -9.90899 -9.65731 -9.56844 -8.46843 -6.64440 -5.63877 -3.08480 3.42076 3.48874 3.51224 4.56997 4.69913 4.75514 4.81773 5.34528 5.46959 5.52523 5.58154 5.69186 5.73810 5.75013 5.82506 5.86492 5.96109 6.06429 6.13125 6.17217 6.31110 6.33678 6.46067 6.51766 6.62268 6.68217 6.69041 6.86028 7.09379 7.27671 7.47728 7.82236 7.88954 8.49846 9.33734 9.98124 10.47382 11.41673 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045672 B = 0.005955 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.916784 B = 4700.793120 C = 4773.761992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.606 5.606 3 C -0.248 4.248 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.911 5.911 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.152 3.848 12 C -0.136 4.136 13 C -0.108 4.108 14 C -0.091 4.091 15 C -0.119 4.119 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.121 4.121 19 H 0.026 0.974 20 H 0.043 0.957 21 H -0.005 1.005 22 H 0.250 0.750 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -13.290 4.017 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.329 5.329 3 C -0.378 4.378 4 H 0.085 0.915 5 C -0.200 4.200 6 N -0.557 5.557 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.025 3.975 12 C -0.176 4.176 13 C -0.146 4.146 14 C -0.109 4.109 15 C -0.156 4.156 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.159 4.159 19 H 0.044 0.956 20 H 0.061 0.939 21 H 0.013 0.987 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.773 -13.150 4.059 14.566 hybrid contribution 0.341 0.987 0.101 1.049 sum 5.113 -12.163 4.160 13.834 Atomic orbital electron populations 1.20763 0.82728 0.95340 0.99114 1.44000 1.01895 1.00881 1.86140 1.19275 0.97821 0.85535 1.35122 0.91456 1.25014 0.97786 0.98435 0.98743 1.70081 1.17979 1.26728 1.40927 0.86201 0.78633 0.84488 0.77366 1.20381 1.21704 1.21817 1.20835 0.95338 0.87826 0.93508 1.22225 0.99506 0.94839 1.01028 1.21581 1.00097 0.98181 0.94773 1.22175 0.95271 0.96543 0.96953 1.22426 0.97461 0.98684 0.97061 1.22144 0.96377 0.98966 0.98856 1.22124 0.96992 0.99673 0.97413 1.22435 0.99476 0.97141 0.96848 0.95551 0.93868 0.98694 0.93957 0.94225 0.94881 0.92885 0.92253 0.92596 0.92724 0.90874 0.91758 0.91544 0.92340 0.92193 0.92265 0.92385 0.92094 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.28 9.01 59.84 0.54 4.81 16 2 N -0.61 -15.99 2.93 -181.12 -0.53 -16.52 16 3 C -0.25 -7.06 9.67 -15.06 -0.15 -7.21 16 4 H 0.07 1.88 7.84 -52.48 -0.41 1.47 16 5 C 0.00 -0.07 5.13 -17.43 -0.09 -0.16 16 6 N -0.91 -27.39 10.58 55.49 0.59 -26.80 16 7 Si 0.90 22.41 29.57 -169.99 -5.03 17.38 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 C 0.15 3.27 5.71 -4.04 -0.02 3.24 16 12 C -0.14 -2.62 5.43 -26.73 -0.15 -2.77 16 13 C -0.11 -1.63 4.72 -26.73 -0.13 -1.75 16 14 C -0.09 -1.23 2.86 -88.59 -0.25 -1.49 16 15 C -0.12 -1.55 5.71 -25.03 -0.14 -1.70 16 16 C -0.13 -1.40 6.80 -25.61 -0.17 -1.57 16 17 C -0.12 -1.30 6.80 -25.61 -0.17 -1.47 16 18 C -0.12 -1.39 6.27 -25.07 -0.16 -1.54 16 19 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 20 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 21 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 22 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 24 H 0.03 0.65 7.86 -51.93 -0.41 0.25 16 25 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.70 8.05 -51.93 -0.42 0.29 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -29.92 291.92 -8.45 -38.37 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.98 Total: -5.24 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.89 Total: -11.59 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.06 Total: -43.32 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.92 -8.45 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308407283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.054 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds