Wall clock time and date at job start Sun Mar 29 2020 21:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36943 * 119.99977 * 2 1 4 4 H 1.08003 * 119.99753 * 202.34665 * 3 2 1 5 5 C 1.38811 * 119.99846 * 22.34272 * 3 2 1 6 6 N 1.31613 * 119.99877 * 11.35612 * 5 3 2 7 7 Si 1.86801 * 119.99666 * 191.35659 * 5 3 2 8 8 H 1.48497 * 109.47060 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47139 * 119.99988 * 7 5 3 10 10 H 1.48502 * 109.46695 * 239.99842 * 7 5 3 11 11 C 1.46504 * 120.00247 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47257 * 270.00041 * 11 2 1 13 13 C 1.53000 * 109.46911 * 179.97438 * 12 11 2 14 14 C 1.52999 * 109.46911 * 180.02562 * 13 12 11 15 15 C 1.54965 * 110.92299 * 71.54273 * 14 13 12 16 16 C 1.54267 * 104.16116 * 156.29530 * 15 14 13 17 17 C 1.53872 * 106.63914 * 336.44703 * 16 15 14 18 18 C 1.54271 * 106.59882 * 359.97252 * 17 16 15 19 19 H 1.09003 * 109.47388 * 274.20860 * 1 2 3 20 20 H 1.09000 * 109.47229 * 34.21215 * 1 2 3 21 21 H 1.09002 * 109.47073 * 154.21029 * 1 2 3 22 22 H 0.97008 * 120.00169 * 180.02562 * 6 5 3 23 23 H 1.09006 * 109.46851 * 149.99666 * 11 2 1 24 24 H 1.09000 * 109.46893 * 30.00049 * 11 2 1 25 25 H 1.08997 * 109.46762 * 59.99685 * 12 11 2 26 26 H 1.09000 * 109.47176 * 299.99835 * 12 11 2 27 27 H 1.09005 * 109.47146 * 60.00564 * 13 12 11 28 28 H 1.09000 * 109.47288 * 300.00038 * 13 12 11 29 29 H 1.09002 * 110.67292 * 308.23767 * 14 13 12 30 30 H 1.09000 * 110.48014 * 37.63885 * 15 14 13 31 31 H 1.09006 * 110.52780 * 274.97430 * 15 14 13 32 32 H 1.08994 * 110.03325 * 217.13478 * 16 15 14 33 33 H 1.09000 * 110.03328 * 95.75179 * 16 15 14 34 34 H 1.08996 * 110.03573 * 119.26305 * 17 16 15 35 35 H 1.09001 * 110.03068 * 240.64586 * 17 16 15 36 36 H 1.09003 * 110.48129 * 142.29389 * 18 17 16 37 37 H 1.08997 * 110.48668 * 264.80036 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3842 2.2690 1.0936 7 14 2.3365 4.0048 0.1683 8 1 3.6141 3.8167 -0.5647 9 1 1.4265 4.8615 -0.6337 10 1 2.6072 4.6572 1.4746 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2170 -3.0351 1.4437 14 6 3.4715 -3.4765 2.8864 15 6 2.1583 -3.9479 3.5607 16 6 2.6299 -4.8874 4.6897 17 6 4.0243 -5.3971 4.2852 18 6 4.3520 -4.7502 2.9235 19 1 -0.3634 0.0754 1.0249 20 1 -0.3634 0.8498 -0.5778 21 1 -0.3633 -0.9253 -0.4471 22 1 -0.0465 3.0776 1.4127 23 1 3.1499 -1.1385 -0.5134 24 1 1.6084 -2.0286 -0.5129 25 1 1.5001 -1.8399 1.9571 26 1 3.0416 -0.9499 1.9568 27 1 4.1695 -2.9053 0.9298 28 1 2.6276 -3.7948 0.9304 29 1 3.9319 -2.6717 3.4595 30 1 1.5368 -4.4899 2.8479 31 1 1.6143 -3.0983 3.9737 32 1 1.9406 -5.7257 4.7903 33 1 2.6910 -4.3397 5.6302 34 1 4.7621 -5.0961 5.0288 35 1 4.0118 -6.4828 4.1901 36 1 5.4081 -4.4856 2.8713 37 1 4.0875 -5.4232 2.1080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308407283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:01 Heat of formation + Delta-G solvation = -28.636697 kcal Electronic energy + Delta-G solvation = -14204.450399 eV Core-core repulsion = 11980.321604 eV Total energy + Delta-G solvation = -2224.128795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.36716 -37.66521 -34.70044 -32.75558 -29.74385 -29.40914 -27.92117 -26.10664 -23.46233 -21.91769 -20.89379 -20.71728 -18.75008 -16.88726 -16.71309 -15.93101 -15.81198 -15.27946 -14.96222 -14.61157 -14.13166 -13.90508 -13.24890 -13.18719 -12.83499 -12.58804 -12.53936 -12.17345 -12.13098 -12.03686 -11.94768 -11.88414 -11.48082 -11.40214 -11.27398 -11.21306 -11.12306 -10.64182 -8.76880 -7.82407 -5.29841 1.45385 1.45804 1.56982 2.51433 3.31259 3.63701 3.78978 3.81632 3.91889 4.25451 4.39400 4.56578 4.58802 4.66470 4.72986 4.79776 4.82202 4.85518 4.91717 5.00297 5.02768 5.14481 5.16038 5.19760 5.29945 5.34776 5.37711 5.46898 5.52755 5.58751 5.62267 5.67861 5.74765 6.34758 7.16417 7.89699 8.33187 9.22040 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045672 B = 0.005955 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.916784 B = 4700.793120 C = 4773.761992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.625 5.625 3 C -0.259 4.259 4 H 0.070 0.930 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.970 3.030 8 H -0.265 1.265 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.147 3.853 12 C -0.121 4.121 13 C -0.097 4.097 14 C -0.094 4.094 15 C -0.122 4.122 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.116 4.116 19 H 0.000 1.000 20 H 0.017 0.983 21 H 0.029 0.971 22 H 0.247 0.753 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 -14.745 3.698 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.348 5.348 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.252 4.252 6 N -0.591 5.591 7 Si 0.798 3.202 8 H -0.190 1.190 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.021 3.979 12 C -0.161 4.161 13 C -0.135 4.135 14 C -0.113 4.113 15 C -0.159 4.159 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.154 4.154 19 H 0.018 0.982 20 H 0.035 0.965 21 H 0.047 0.953 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.012 -14.636 3.732 16.257 hybrid contribution -0.048 1.393 0.181 1.406 sum 5.965 -13.243 3.913 15.042 Atomic orbital electron populations 1.20515 0.82930 0.95854 0.97334 1.44289 1.02210 1.02055 1.86277 1.19606 0.98032 0.86738 1.34583 0.91221 1.25816 0.98532 1.01964 0.98917 1.70254 1.19401 1.27298 1.42102 0.85159 0.78119 0.79902 0.77042 1.18970 1.21654 1.21940 1.21050 0.95451 0.86461 0.94899 1.21988 0.98819 0.96426 0.98882 1.21476 0.99939 0.95833 0.96248 1.22148 0.96119 0.97382 0.95635 1.22430 0.97127 0.98482 0.97888 1.22142 0.97248 0.98880 0.97921 1.22127 0.96383 1.00592 0.96858 1.22402 0.99277 0.95848 0.97851 0.98198 0.96458 0.95265 0.94387 0.93667 0.92635 0.94485 0.95311 0.91740 0.91204 0.92421 0.91486 0.93652 0.91087 0.92295 0.91738 0.90722 0.91418 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.33 9.01 127.77 1.15 10.48 16 2 N -0.62 -33.00 2.93 -726.93 -2.13 -35.12 16 3 C -0.26 -14.84 9.67 84.03 0.81 -14.02 16 4 H 0.07 3.87 7.84 -2.91 -0.02 3.85 16 5 C -0.06 -3.37 5.13 84.86 0.44 -2.93 16 6 N -0.94 -57.91 10.58 21.65 0.23 -57.68 16 7 Si 0.97 46.40 29.57 68.60 2.03 48.42 16 8 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 11 C 0.15 6.17 5.71 86.38 0.49 6.66 16 12 C -0.12 -4.66 5.43 30.59 0.17 -4.50 16 13 C -0.10 -2.76 4.72 30.59 0.14 -2.61 16 14 C -0.09 -2.44 2.86 -9.48 -0.03 -2.46 16 15 C -0.12 -3.07 5.71 31.70 0.18 -2.89 16 16 C -0.12 -2.53 6.80 31.32 0.21 -2.31 16 17 C -0.12 -2.20 6.80 31.32 0.21 -1.99 16 18 C -0.12 -2.34 6.27 31.67 0.20 -2.14 16 19 H 0.00 -0.02 7.42 -2.39 -0.02 -0.03 16 20 H 0.02 0.95 7.19 -2.39 -0.02 0.93 16 21 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 22 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 23 H 0.04 1.84 8.03 -2.38 -0.02 1.82 16 24 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 25 H 0.04 1.52 7.66 -2.39 -0.02 1.50 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 31 H 0.04 1.31 8.10 -2.38 -0.02 1.29 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.35 8.05 -2.39 -0.02 1.34 16 Total: -1.00 -64.02 291.92 5.10 -58.92 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.99 Total: 4.19 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.98 Total: -18.72 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -1.90 Total: -92.81 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -64.02 5.10 -58.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308407283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.284 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds