Wall clock time and date at job start Sun Mar 29 2020 21:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47329 * 2 1 4 4 C 1.46902 * 110.99488 * 295.44750 * 3 2 1 5 5 C 1.50697 * 109.47081 * 291.03468 * 4 3 2 6 6 H 1.07990 * 120.00433 * 355.05581 * 5 4 3 7 7 C 1.37884 * 119.99842 * 175.05284 * 5 4 3 8 8 N 1.31515 * 119.99759 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99822 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47203 * 89.99979 * 9 7 5 11 11 H 1.48502 * 109.46779 * 209.99643 * 9 7 5 12 12 H 1.48493 * 109.47155 * 329.99599 * 9 7 5 13 13 C 1.46896 * 110.99976 * 59.40082 * 3 2 1 14 14 H 1.09004 * 110.01742 * 295.98463 * 13 3 2 15 15 C 1.54261 * 110.03393 * 174.59662 * 13 3 2 16 16 C 1.54889 * 104.19653 * 217.05877 * 15 13 3 17 17 C 1.54883 * 102.91578 * 37.84530 * 16 15 13 18 18 H 1.09007 * 110.48804 * 80.83203 * 17 16 15 19 19 C 1.53005 * 110.48759 * 203.47108 * 17 16 15 20 20 C 1.53873 * 110.07303 * 57.40252 * 13 3 2 21 21 H 1.09001 * 109.47351 * 301.67169 * 1 2 3 22 22 H 1.08999 * 109.47127 * 61.67530 * 1 2 3 23 23 H 1.09007 * 109.47504 * 181.67497 * 1 2 3 24 24 H 1.09007 * 109.47100 * 239.99837 * 2 1 3 25 25 H 1.09002 * 109.47062 * 120.00001 * 2 1 3 26 26 H 1.08995 * 109.47269 * 51.04138 * 4 3 2 27 27 H 1.09004 * 109.46589 * 171.03754 * 4 3 2 28 28 H 0.97001 * 119.99874 * 180.02562 * 8 7 5 29 29 H 1.09000 * 110.49125 * 98.37504 * 15 13 3 30 30 H 1.09001 * 110.48298 * 335.73264 * 15 13 3 31 31 H 1.09002 * 110.75871 * 156.25280 * 16 15 13 32 32 H 1.09006 * 110.75481 * 279.43902 * 16 15 13 33 33 H 1.09000 * 109.46580 * 58.55243 * 19 17 16 34 34 H 1.08995 * 109.47013 * 178.54689 * 19 17 16 35 35 H 1.08991 * 109.47270 * 298.54697 * 19 17 16 36 36 H 1.09000 * 110.03090 * 238.59058 * 20 13 3 37 37 H 1.09000 * 110.03407 * 359.97193 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6395 2.0777 -1.2384 5 6 2.4058 1.4926 -2.3967 6 1 3.1625 0.7428 -2.2199 7 6 2.1406 1.9147 -3.6823 8 7 1.2186 2.8275 -3.8976 9 14 3.0899 1.1890 -5.1181 10 1 2.3754 -0.0084 -5.6293 11 1 3.1993 2.1998 -6.2005 12 1 4.4494 0.7987 -4.6659 13 6 1.5370 2.1140 1.1804 14 1 0.4505 2.1957 1.1500 15 6 2.1713 3.5193 1.2295 16 6 2.4187 3.7720 2.7375 17 6 2.8589 2.3798 3.2541 18 1 3.9127 2.2072 3.0349 19 6 2.5964 2.2586 4.7566 20 6 1.9754 1.3887 2.4648 21 1 -0.3634 0.5396 0.8746 22 1 -0.3633 0.4876 -0.9046 23 1 -0.3634 -1.0273 0.0300 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5704 1.9540 -1.4104 27 1 1.8725 3.1386 -1.1474 28 1 1.0317 3.1242 -4.8020 29 1 1.4838 4.2626 0.8259 30 1 3.1132 3.5320 0.6811 31 1 3.2117 4.5059 2.8813 32 1 1.5017 4.0948 3.2306 33 1 1.5357 2.4136 4.9537 34 1 2.8878 1.2651 5.0973 35 1 3.1787 3.0106 5.2890 36 1 1.1016 1.1185 3.0577 37 1 2.5461 0.4950 2.2127 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308431631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:28 Heat of formation + Delta-G solvation = -34.872561 kcal Electronic energy + Delta-G solvation = -14788.909504 eV Core-core repulsion = 12564.510302 eV Total energy + Delta-G solvation = -2224.399202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24905 -37.16400 -34.66858 -32.07995 -30.60904 -29.66347 -27.59066 -25.70570 -24.54057 -22.55922 -20.92179 -19.60471 -18.37110 -17.37328 -16.56710 -16.26606 -15.80473 -15.07061 -14.70401 -14.42530 -14.21124 -13.86102 -13.42043 -13.15810 -13.04599 -12.80422 -12.71872 -12.55232 -12.20118 -12.09563 -11.83389 -11.60529 -11.55662 -11.38973 -11.27358 -11.22931 -11.09930 -10.57693 -8.85281 -8.17757 -6.27166 1.39580 1.40926 1.52621 2.40820 3.14149 3.38766 3.70345 3.82438 4.05810 4.26743 4.40572 4.47456 4.57230 4.60340 4.64600 4.76598 4.78186 4.86413 4.92252 4.98147 5.03902 5.13519 5.17123 5.20513 5.23942 5.31726 5.41775 5.43055 5.44792 5.55569 5.64678 5.72297 6.14318 6.45424 6.78617 6.91185 7.42214 8.92611 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043101 B = 0.007841 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.474554 B = 3570.288250 C = 3805.939282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.057 3.943 3 N -0.537 5.537 4 C 0.204 3.796 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.073 3.927 14 H 0.022 0.978 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.091 4.091 18 H 0.068 0.932 19 C -0.136 4.136 20 C -0.106 4.106 21 H 0.057 0.943 22 H 0.027 0.973 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.086 0.914 26 H -0.029 1.029 27 H 0.002 0.998 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -2.445 14.313 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.071 4.071 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.035 4.035 14 H 0.040 0.960 15 C -0.155 4.155 16 C -0.146 4.146 17 C -0.110 4.110 18 H 0.086 0.914 19 C -0.193 4.193 20 C -0.143 4.143 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.105 0.895 26 H -0.011 1.011 27 H 0.020 0.980 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.597 -2.364 14.203 14.487 hybrid contribution -0.783 0.036 -1.474 1.669 sum 0.813 -2.328 12.730 12.966 Atomic orbital electron populations 1.22266 0.98673 1.02136 1.00507 1.22054 0.92748 0.90670 1.01659 1.62435 1.58987 1.02437 1.02202 1.19390 0.92792 0.93092 0.86917 1.21487 1.19974 1.22553 0.91669 0.92346 1.25887 0.96358 0.95613 1.01857 1.70094 1.33924 1.31833 1.21863 0.85431 0.79138 0.78049 0.78299 1.19859 1.20785 1.19013 1.22335 0.95642 0.94229 0.91315 0.96016 1.22365 0.99959 0.95271 0.97888 1.22503 1.01542 0.97367 0.93170 1.21933 0.99181 0.94159 0.95687 0.91380 1.21746 1.01866 1.02123 0.93553 1.22314 0.99747 0.98567 0.93692 0.92454 0.95420 0.90821 0.92575 0.89543 1.01102 0.98002 0.92853 0.93830 0.92846 0.90813 0.90691 0.92349 0.92133 0.91799 0.90939 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.47 9.25 71.98 0.67 -5.80 16 2 C 0.06 2.21 5.57 86.30 0.48 2.70 16 3 N -0.54 -23.72 4.46 -871.29 -3.89 -27.61 16 4 C 0.20 11.16 4.44 85.56 0.38 11.54 16 5 C -0.52 -30.18 8.39 25.60 0.21 -29.97 16 6 H 0.06 3.36 7.51 -2.92 -0.02 3.34 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 9 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.07 2.70 2.11 45.64 0.10 2.80 16 14 H 0.02 0.85 6.52 -2.38 -0.02 0.83 16 15 C -0.12 -4.18 5.04 31.67 0.16 -4.02 16 16 C -0.11 -2.81 6.32 31.88 0.20 -2.61 16 17 C -0.09 -2.21 3.47 -9.65 -0.03 -2.25 16 18 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 19 C -0.14 -2.46 9.13 71.98 0.66 -1.80 16 20 C -0.11 -2.98 5.54 31.39 0.17 -2.81 16 21 H 0.06 1.93 6.40 -2.39 -0.02 1.91 16 22 H 0.03 1.20 6.41 -2.39 -0.02 1.18 16 23 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.06 2.43 7.06 -2.38 -0.02 2.42 16 25 H 0.09 2.82 6.19 -2.39 -0.01 2.81 16 26 H -0.03 -1.70 6.08 -2.39 -0.01 -1.72 16 27 H 0.00 0.11 6.68 -2.39 -0.02 0.10 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 30 H 0.05 2.17 7.91 -2.39 -0.02 2.15 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.75 8.06 -2.38 -0.02 1.73 16 33 H 0.06 1.00 8.11 -2.39 -0.02 0.98 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.79 7.82 -2.39 -0.02 1.77 16 37 H 0.07 2.01 6.19 -2.39 -0.01 2.00 16 Total: -1.00 -64.28 281.41 2.89 -61.38 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.01 Total: 7.97 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.46 Total: -31.74 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.60 Total: -84.98 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.28 2.89 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308431631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.510 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds