Wall clock time and date at job start Sun Mar 29 2020 21:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46899 * 109.47593 * 2 1 4 4 C 1.46892 * 111.00491 * 165.55930 * 3 2 1 5 5 C 1.50704 * 109.46977 * 293.95457 * 4 3 2 6 6 H 1.07996 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00038 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47306 * 89.99998 * 9 7 5 11 11 H 1.48503 * 109.47002 * 209.99698 * 9 7 5 12 12 H 1.48497 * 109.47421 * 329.99497 * 9 7 5 13 13 C 1.46903 * 110.99823 * 289.51482 * 3 2 1 14 14 H 1.09004 * 110.01732 * 52.84335 * 13 3 2 15 15 C 1.53872 * 110.03521 * 174.24214 * 13 3 2 16 16 C 1.54264 * 106.59871 * 119.27977 * 15 13 3 17 17 C 1.54889 * 104.19531 * 23.61371 * 16 15 13 18 18 H 1.09008 * 110.75613 * 80.37010 * 17 16 15 19 19 C 1.53002 * 110.75436 * 203.55437 * 17 16 15 20 20 C 1.54272 * 110.02949 * 291.40823 * 13 3 2 21 21 H 1.09000 * 109.47440 * 185.60723 * 1 2 3 22 22 H 1.09000 * 109.47166 * 65.61276 * 1 2 3 23 23 H 1.08996 * 109.47295 * 305.61162 * 1 2 3 24 24 H 1.09003 * 109.46997 * 120.00041 * 2 1 3 25 25 H 1.09002 * 109.47649 * 239.99372 * 2 1 3 26 26 H 1.08999 * 109.47303 * 53.94870 * 4 3 2 27 27 H 1.08998 * 109.47138 * 173.95573 * 4 3 2 28 28 H 0.96996 * 119.99892 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.03216 * 238.56959 * 15 13 3 30 30 H 1.09003 * 110.02775 * 359.94441 * 15 13 3 31 31 H 1.09006 * 110.48031 * 142.28764 * 16 15 13 32 32 H 1.08997 * 110.48602 * 264.93309 * 16 15 13 33 33 H 1.09001 * 109.46639 * 58.54506 * 19 17 16 34 34 H 1.08998 * 109.46863 * 178.54527 * 19 17 16 35 35 H 1.08996 * 109.47244 * 298.54633 * 19 17 16 36 36 H 1.09000 * 110.48354 * 335.78477 * 20 13 3 37 37 H 1.09001 * 110.48385 * 98.42996 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4473 1.4386 0.3420 5 6 3.6394 0.9904 1.7679 6 1 2.7862 0.6956 2.3609 7 6 4.9042 0.9576 2.3159 8 7 5.9431 1.3171 1.5939 9 14 5.1422 0.4028 4.0835 10 1 5.3597 -1.0658 4.1164 11 1 6.3232 1.0912 4.6637 12 1 3.9329 0.7419 4.8760 13 6 1.7633 2.0340 -1.2927 14 1 0.7104 1.9356 -1.5573 15 6 2.1524 3.5210 -1.2223 16 6 3.2578 3.7376 -2.2763 17 6 3.0423 2.5901 -3.2941 18 1 2.2362 2.8339 -3.9861 19 6 4.3354 2.2904 -4.0551 20 6 2.6458 1.3988 -2.3871 21 1 -0.3634 -1.0227 0.1004 22 1 -0.3633 0.4243 -0.9360 23 1 -0.3634 0.5984 0.8354 24 1 1.8932 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 4.0054 0.7805 -0.3240 27 1 3.8094 2.4606 0.2304 28 1 6.8329 1.2937 1.9793 29 1 1.2886 4.1444 -1.4535 30 1 2.5306 3.7613 -0.2287 31 1 3.1372 4.7060 -2.7621 32 1 4.2433 3.6602 -1.8171 33 1 5.1187 2.0189 -3.3475 34 1 4.1672 1.4642 -4.7458 35 1 4.6413 3.1747 -4.6141 36 1 3.5324 0.9437 -1.9457 37 1 2.0785 0.6604 -2.9537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308431632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:29 Heat of formation + Delta-G solvation = -17.744289 kcal Electronic energy + Delta-G solvation = -14955.961123 eV Core-core repulsion = 12732.304658 eV Total energy + Delta-G solvation = -2223.656465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.89214 -35.22291 -32.57670 -30.76722 -29.35740 -27.92667 -25.86092 -24.26171 -22.37115 -21.14027 -19.58757 -18.17528 -16.46783 -15.55581 -14.79360 -14.51453 -13.96477 -13.66849 -13.23958 -12.95102 -12.63814 -12.41840 -12.05242 -11.65817 -11.32674 -11.05292 -10.86962 -10.73758 -10.65826 -10.45137 -10.38474 -10.24309 -10.18572 -9.92962 -9.90989 -9.45274 -9.08297 -8.37791 -7.05960 -5.98413 -3.98628 3.33462 3.39831 3.44380 4.45982 4.94998 5.01227 5.17547 5.35433 5.39091 5.70110 5.77095 5.83475 5.91064 5.98929 6.03675 6.06206 6.10441 6.16134 6.24274 6.37572 6.39964 6.45680 6.50967 6.53171 6.73970 6.82661 6.86798 6.89327 6.91435 7.43909 7.52082 7.87649 8.21349 8.33523 8.66735 9.09878 9.64968 11.12180 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.010171 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.396180 B = 2752.379495 C = 3349.264086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.530 5.530 4 C 0.191 3.809 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.081 3.919 14 H 0.067 0.933 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.093 4.093 18 H 0.065 0.935 19 C -0.143 4.143 20 C -0.157 4.157 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.019 0.981 26 H -0.007 1.007 27 H 0.036 0.964 28 H 0.260 0.740 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 1.294 -8.090 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 N -0.254 5.254 4 C 0.066 3.934 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.028 4.028 14 H 0.085 0.915 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.112 4.112 18 H 0.084 0.916 19 C -0.200 4.200 20 C -0.196 4.196 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.037 0.963 26 H 0.011 0.989 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.455 1.575 -7.687 10.161 hybrid contribution 0.724 -0.776 0.278 1.098 sum -5.731 0.799 -7.409 9.401 Atomic orbital electron populations 1.21794 0.96909 1.00208 1.01246 1.21932 0.93865 0.90789 1.00767 1.62382 1.21670 1.15275 1.26053 1.19751 0.81202 0.97146 0.95333 1.21229 0.92559 1.43412 0.97336 0.92032 1.24968 0.96016 0.95742 0.97853 1.69960 0.98715 1.48641 1.36494 0.86557 0.77662 0.78545 0.85013 1.20844 1.21322 1.19823 1.22290 0.97710 0.94001 0.88842 0.91452 1.22174 0.97484 0.95480 1.00342 1.22426 0.99958 0.97091 0.96180 1.21995 0.96959 0.95992 0.96233 0.91615 1.21756 0.97772 1.00508 0.99975 1.23187 1.01470 0.97443 0.97510 0.93565 0.93903 0.92266 0.89980 0.96319 0.98903 0.94615 0.93057 0.92807 0.90033 0.92651 0.91174 0.92233 0.93336 0.93234 0.89970 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.83 37.15 0.37 -1.96 16 2 C 0.05 1.09 5.43 -3.83 -0.02 1.07 16 3 N -0.53 -11.48 4.40 -226.74 -1.00 -12.48 16 4 C 0.19 4.91 3.84 -4.98 -0.02 4.89 16 5 C -0.51 -14.26 8.30 -34.44 -0.29 -14.55 16 6 H 0.06 1.73 7.24 -52.49 -0.38 1.35 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.08 1.49 2.86 -66.59 -0.19 1.30 16 14 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 15 C -0.12 -2.05 5.82 -25.62 -0.15 -2.20 16 16 C -0.12 -1.92 6.25 -25.07 -0.16 -2.08 16 17 C -0.09 -1.41 3.49 -88.63 -0.31 -1.72 16 18 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 19 C -0.14 -2.03 9.28 37.16 0.34 -1.68 16 20 C -0.16 -2.75 4.58 -25.07 -0.11 -2.86 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.64 6.82 -51.93 -0.35 0.29 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.79 6.60 -51.93 -0.34 1.45 16 25 H 0.02 0.36 7.14 -51.93 -0.37 -0.01 16 26 H -0.01 -0.18 6.23 -51.93 -0.32 -0.51 16 27 H 0.04 0.98 6.20 -51.93 -0.32 0.66 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.65 6.59 -51.93 -0.34 1.31 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.69 5.49 -51.93 -0.28 1.41 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -28.78 282.15 -8.08 -36.86 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.42 Total: -1.15 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -0.63 Total: -18.34 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.26 Total: -38.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.78 -8.08 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308431632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.116 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds