Wall clock time and date at job start Sun Mar 29 2020 21:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46899 * 109.47593 * 2 1 4 4 C 1.46892 * 111.00491 * 165.55930 * 3 2 1 5 5 C 1.50704 * 109.46977 * 293.95457 * 4 3 2 6 6 H 1.07996 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00038 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47306 * 89.99998 * 9 7 5 11 11 H 1.48503 * 109.47002 * 209.99698 * 9 7 5 12 12 H 1.48497 * 109.47421 * 329.99497 * 9 7 5 13 13 C 1.46903 * 110.99823 * 289.51482 * 3 2 1 14 14 H 1.09004 * 110.01732 * 52.84335 * 13 3 2 15 15 C 1.53872 * 110.03521 * 174.24214 * 13 3 2 16 16 C 1.54264 * 106.59871 * 119.27977 * 15 13 3 17 17 C 1.54889 * 104.19531 * 23.61371 * 16 15 13 18 18 H 1.09008 * 110.75613 * 80.37010 * 17 16 15 19 19 C 1.53002 * 110.75436 * 203.55437 * 17 16 15 20 20 C 1.54272 * 110.02949 * 291.40823 * 13 3 2 21 21 H 1.09000 * 109.47440 * 185.60723 * 1 2 3 22 22 H 1.09000 * 109.47166 * 65.61276 * 1 2 3 23 23 H 1.08996 * 109.47295 * 305.61162 * 1 2 3 24 24 H 1.09003 * 109.46997 * 120.00041 * 2 1 3 25 25 H 1.09002 * 109.47649 * 239.99372 * 2 1 3 26 26 H 1.08999 * 109.47303 * 53.94870 * 4 3 2 27 27 H 1.08998 * 109.47138 * 173.95573 * 4 3 2 28 28 H 0.96996 * 119.99892 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.03216 * 238.56959 * 15 13 3 30 30 H 1.09003 * 110.02775 * 359.94441 * 15 13 3 31 31 H 1.09006 * 110.48031 * 142.28764 * 16 15 13 32 32 H 1.08997 * 110.48602 * 264.93309 * 16 15 13 33 33 H 1.09001 * 109.46639 * 58.54506 * 19 17 16 34 34 H 1.08998 * 109.46863 * 178.54527 * 19 17 16 35 35 H 1.08996 * 109.47244 * 298.54633 * 19 17 16 36 36 H 1.09000 * 110.48354 * 335.78477 * 20 13 3 37 37 H 1.09001 * 110.48385 * 98.42996 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4473 1.4386 0.3420 5 6 3.6394 0.9904 1.7679 6 1 2.7862 0.6956 2.3609 7 6 4.9042 0.9576 2.3159 8 7 5.9431 1.3171 1.5939 9 14 5.1422 0.4028 4.0835 10 1 5.3597 -1.0658 4.1164 11 1 6.3232 1.0912 4.6637 12 1 3.9329 0.7419 4.8760 13 6 1.7633 2.0340 -1.2927 14 1 0.7104 1.9356 -1.5573 15 6 2.1524 3.5210 -1.2223 16 6 3.2578 3.7376 -2.2763 17 6 3.0423 2.5901 -3.2941 18 1 2.2362 2.8339 -3.9861 19 6 4.3354 2.2904 -4.0551 20 6 2.6458 1.3988 -2.3871 21 1 -0.3634 -1.0227 0.1004 22 1 -0.3633 0.4243 -0.9360 23 1 -0.3634 0.5984 0.8354 24 1 1.8932 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 4.0054 0.7805 -0.3240 27 1 3.8094 2.4606 0.2304 28 1 6.8329 1.2937 1.9793 29 1 1.2886 4.1444 -1.4535 30 1 2.5306 3.7613 -0.2287 31 1 3.1372 4.7060 -2.7621 32 1 4.2433 3.6602 -1.8171 33 1 5.1187 2.0189 -3.3475 34 1 4.1672 1.4642 -4.7458 35 1 4.6413 3.1747 -4.6141 36 1 3.5324 0.9437 -1.9457 37 1 2.0785 0.6604 -2.9537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308431632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:29 Heat of formation + Delta-G solvation = -34.965811 kcal Electronic energy + Delta-G solvation = -14956.707904 eV Core-core repulsion = 12732.304658 eV Total energy + Delta-G solvation = -2224.403246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.40455 -36.77610 -34.70215 -32.13929 -30.98628 -29.52631 -27.61913 -25.70344 -24.28405 -22.67218 -20.91235 -19.78367 -18.52767 -17.09998 -16.55513 -16.24481 -15.57078 -15.31125 -14.62987 -14.44057 -14.10787 -13.93770 -13.86638 -13.11540 -12.90349 -12.71671 -12.65816 -12.34867 -12.27285 -12.00975 -12.00209 -11.73809 -11.66029 -11.41534 -11.35096 -11.16676 -11.01194 -10.56889 -8.82917 -8.18213 -6.27314 1.38732 1.40011 1.51627 2.40216 3.13425 3.35932 3.69103 3.83668 4.03324 4.28920 4.43701 4.48791 4.58219 4.65785 4.68219 4.71149 4.75115 4.79880 4.90347 4.98753 5.05863 5.11137 5.19303 5.20940 5.21956 5.31648 5.32695 5.42416 5.47970 5.59563 5.64820 5.69081 6.14494 6.47208 6.80088 6.91473 7.41741 8.92134 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.010171 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.396180 B = 2752.379495 C = 3349.264086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 N -0.539 5.539 4 C 0.214 3.786 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.076 3.924 14 H 0.093 0.907 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.085 4.085 18 H 0.098 0.902 19 C -0.140 4.140 20 C -0.154 4.154 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.019 0.981 26 H -0.037 1.037 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 1.359 -8.878 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.262 5.262 4 C 0.088 3.912 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.190 1.190 13 C -0.033 4.033 14 H 0.111 0.889 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.104 4.104 18 H 0.116 0.884 19 C -0.198 4.198 20 C -0.193 4.193 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.037 0.963 26 H -0.020 1.020 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.239 1.638 -8.484 11.939 hybrid contribution 1.258 -0.793 0.484 1.564 sum -6.982 0.845 -8.000 10.652 Atomic orbital electron populations 1.21688 0.93363 1.01870 1.01957 1.21964 0.96636 0.89492 0.99401 1.62333 1.18590 1.16651 1.28640 1.19293 0.83575 0.94547 0.93835 1.21563 0.92736 1.43535 0.98520 0.92380 1.25864 0.95647 0.95662 1.02404 1.70094 0.99197 1.49557 1.38502 0.85460 0.77798 0.78358 0.79485 1.19905 1.20725 1.19033 1.22488 0.99189 0.94164 0.87445 0.88914 1.22176 0.98904 0.95521 0.98812 1.22396 0.97620 0.99232 0.96188 1.22021 0.98325 0.94032 0.96002 0.88410 1.21730 0.96440 1.02031 0.99574 1.23094 0.99752 0.98655 0.97790 0.91218 0.92082 0.92815 0.92810 0.96321 1.01972 0.97224 0.92864 0.89741 0.93726 0.89703 0.94704 0.95255 0.91848 0.91144 0.94108 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.83 71.98 0.71 -3.24 16 2 C 0.05 2.11 5.43 86.30 0.47 2.58 16 3 N -0.54 -23.73 4.40 -871.29 -3.84 -27.56 16 4 C 0.21 11.59 3.84 85.56 0.33 11.92 16 5 C -0.53 -30.63 8.30 25.60 0.21 -30.42 16 6 H 0.06 3.35 7.24 -2.91 -0.02 3.33 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 9 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.08 2.72 2.86 45.64 0.13 2.85 16 14 H 0.09 2.88 6.54 -2.38 -0.02 2.86 16 15 C -0.12 -4.00 5.82 31.32 0.18 -3.82 16 16 C -0.12 -3.70 6.25 31.67 0.20 -3.50 16 17 C -0.09 -2.43 3.49 -9.50 -0.03 -2.46 16 18 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 19 C -0.14 -3.83 9.28 71.98 0.67 -3.16 16 20 C -0.15 -5.30 4.58 31.67 0.15 -5.15 16 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 1.62 6.82 -2.39 -0.02 1.60 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.05 2.41 6.60 -2.39 -0.02 2.39 16 25 H 0.02 0.73 7.14 -2.39 -0.02 0.71 16 26 H -0.04 -2.21 6.23 -2.39 -0.01 -2.23 16 27 H 0.01 0.57 6.20 -2.39 -0.01 0.56 16 28 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.04 1.86 6.59 -2.39 -0.02 1.85 16 31 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.03 1.33 8.05 -2.39 -0.02 1.31 16 33 H 0.03 0.95 8.13 -2.39 -0.02 0.93 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.76 5.49 -2.39 -0.01 1.74 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -64.52 282.15 2.96 -61.56 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.01 Total: 9.44 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 3.47 Total: -33.84 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -3.55 Total: -84.59 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -64.52 2.96 -61.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308431632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.591 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds