Wall clock time and date at job start Sun Mar 29 2020 21:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47201 * 2 1 4 4 C 1.46907 * 111.00059 * 163.87312 * 3 2 1 5 5 C 1.50690 * 109.47104 * 293.95310 * 4 3 2 6 6 H 1.08002 * 120.00417 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99915 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00014 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47185 * 270.00209 * 9 7 5 11 11 H 1.48494 * 109.46919 * 30.00208 * 9 7 5 12 12 H 1.48501 * 109.46614 * 150.00158 * 9 7 5 13 13 C 1.46902 * 110.99781 * 287.82692 * 3 2 1 14 14 H 1.08994 * 110.01764 * 48.81562 * 13 3 2 15 15 C 1.54262 * 110.03152 * 170.20151 * 13 3 2 16 16 C 1.54895 * 104.19414 * 142.89301 * 15 13 3 17 17 C 1.54883 * 102.74939 * 322.05986 * 16 15 13 18 18 H 1.08999 * 110.48957 * 279.12694 * 17 16 15 19 19 C 1.52998 * 110.48479 * 156.61647 * 17 16 15 20 20 C 1.53875 * 110.03260 * 287.42103 * 13 3 2 21 21 H 1.08995 * 109.47584 * 306.47590 * 1 2 3 22 22 H 1.09004 * 109.46983 * 66.47465 * 1 2 3 23 23 H 1.08994 * 109.47091 * 186.47187 * 1 2 3 24 24 H 1.08991 * 109.47575 * 239.99574 * 2 1 3 25 25 H 1.09001 * 109.46755 * 119.99405 * 2 1 3 26 26 H 1.09004 * 109.46609 * 173.94910 * 4 3 2 27 27 H 1.09000 * 109.46827 * 53.95469 * 4 3 2 28 28 H 0.97001 * 119.99805 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.48910 * 261.57544 * 15 13 3 30 30 H 1.09007 * 110.48901 * 24.21788 * 15 13 3 31 31 H 1.09003 * 110.75087 * 80.37884 * 16 15 13 32 32 H 1.09003 * 110.75362 * 203.55527 * 16 15 13 33 33 H 1.09004 * 109.47306 * 61.45593 * 19 17 16 34 34 H 1.08998 * 109.47039 * 181.45181 * 19 17 16 35 35 H 1.09003 * 109.47667 * 301.45718 * 19 17 16 36 36 H 1.08999 * 110.03374 * 0.02562 * 20 13 3 37 37 H 1.08994 * 110.02905 * 121.43102 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4373 1.4422 0.3810 5 6 3.5897 1.0081 1.8159 6 1 2.7205 0.7190 2.3879 7 6 4.8390 0.9799 2.3986 8 7 5.8976 1.3323 1.7022 9 14 5.0279 0.4424 4.1777 10 1 4.9128 1.6259 5.0672 11 1 3.9628 -0.5358 4.5149 12 1 6.3584 -0.1901 4.3649 13 6 1.7993 2.0212 -1.3056 14 1 0.7719 1.8585 -1.6313 15 6 2.0908 3.5332 -1.2126 16 6 2.7540 3.8764 -2.5696 17 6 3.6327 2.6310 -2.8453 18 1 4.5677 2.6929 -2.2884 19 6 3.9112 2.4932 -4.3433 20 6 2.7787 1.4467 -2.3440 21 1 -0.3634 0.6109 0.8263 22 1 -0.3633 0.4102 -0.9423 23 1 -0.3633 -1.0211 0.1158 24 1 1.8934 -0.5138 -0.8898 25 1 1.8932 -0.5138 0.8901 26 1 3.8026 2.4631 0.2693 27 1 4.0136 0.7777 -0.2629 28 1 6.7764 1.3129 2.1123 29 1 1.1641 4.0935 -1.0883 30 1 2.7758 3.7398 -0.3901 31 1 2.0006 3.9977 -3.3480 32 1 3.3668 4.7738 -2.4841 33 1 4.4567 3.3696 -4.6936 34 1 4.5082 1.5988 -4.5211 35 1 2.9674 2.4133 -4.8827 36 1 3.4173 0.6954 -1.8793 37 1 2.2267 1.0059 -3.1740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308431633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:31 Heat of formation + Delta-G solvation = -17.149823 kcal Electronic energy + Delta-G solvation = -14918.812552 eV Core-core repulsion = 12695.181866 eV Total energy + Delta-G solvation = -2223.630687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88944 -35.25389 -32.57315 -30.74093 -29.45709 -27.84291 -25.85084 -24.25902 -22.42759 -21.10828 -19.62972 -18.09859 -16.66813 -15.28969 -15.04030 -14.30728 -14.04457 -13.48681 -13.41186 -13.07542 -12.77685 -12.18115 -12.05969 -11.62351 -11.46980 -11.06691 -10.85689 -10.72502 -10.66762 -10.58705 -10.34832 -10.23772 -10.13464 -9.98407 -9.85436 -9.42407 -9.09775 -8.36708 -7.06799 -5.98388 -3.98576 3.34100 3.40021 3.43673 4.45952 4.91763 5.05855 5.16448 5.35289 5.39594 5.66679 5.77420 5.82815 5.89752 5.98764 6.02241 6.07551 6.09178 6.13438 6.24450 6.27233 6.38828 6.44907 6.49598 6.54057 6.73470 6.81668 6.84511 6.88857 6.94710 7.43421 7.51550 7.87745 8.21752 8.33755 8.66830 9.09925 9.64962 11.12192 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.009819 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.257546 B = 2851.043484 C = 3417.127576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.531 5.531 4 C 0.191 3.809 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.288 1.288 13 C 0.081 3.919 14 H 0.067 0.933 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.095 4.095 18 H 0.077 0.923 19 C -0.140 4.140 20 C -0.153 4.153 21 H 0.059 0.941 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.018 0.982 25 H 0.082 0.918 26 H 0.035 0.965 27 H -0.006 1.006 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 1.390 -8.388 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 N -0.254 5.254 4 C 0.066 3.934 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 C -0.029 4.029 14 H 0.085 0.915 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.113 4.113 18 H 0.096 0.904 19 C -0.197 4.197 20 C -0.192 4.192 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.012 0.988 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.525 1.656 -8.003 10.458 hybrid contribution 0.742 -0.763 0.323 1.113 sum -5.783 0.893 -7.680 9.655 Atomic orbital electron populations 1.21790 0.96883 1.00222 1.01206 1.21944 0.93939 0.90783 1.00749 1.62340 1.22822 1.15630 1.24613 1.19756 0.81418 0.97050 0.95184 1.21225 0.92737 1.43756 0.96809 0.92023 1.24975 0.95908 0.95756 0.97971 1.69963 0.98554 1.48805 1.36481 0.86548 0.77211 0.78775 0.85169 1.20698 1.19928 1.21406 1.22293 0.97299 0.94287 0.89007 0.91500 1.22441 1.00409 0.95146 0.97460 1.22530 0.98316 0.97343 0.97405 1.21918 0.99065 0.95038 0.95328 0.90446 1.21788 1.00835 1.01031 0.96076 1.22932 0.98837 0.98601 0.98837 0.92236 0.93949 0.93567 0.96365 0.89916 0.94722 0.98820 0.93056 0.92430 0.89921 0.92310 0.92153 0.93173 0.93105 0.93200 0.90804 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.86 37.16 0.37 -1.96 16 2 C 0.05 1.08 5.37 -3.83 -0.02 1.06 16 3 N -0.53 -11.49 4.42 -226.75 -1.00 -12.50 16 4 C 0.19 4.92 3.86 -4.98 -0.02 4.90 16 5 C -0.51 -14.27 8.28 -34.44 -0.29 -14.56 16 6 H 0.06 1.73 7.26 -52.49 -0.38 1.35 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.08 1.48 2.85 -66.60 -0.19 1.29 16 14 H 0.07 1.14 6.55 -51.93 -0.34 0.80 16 15 C -0.12 -2.04 6.28 -25.07 -0.16 -2.19 16 16 C -0.12 -1.78 6.33 -24.74 -0.16 -1.94 16 17 C -0.09 -1.54 3.46 -88.91 -0.31 -1.85 16 18 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 19 C -0.14 -1.88 9.12 37.16 0.34 -1.54 16 20 C -0.15 -2.69 4.85 -25.56 -0.12 -2.82 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.64 6.85 -51.93 -0.36 0.28 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.35 7.01 -51.93 -0.36 -0.01 16 25 H 0.08 1.81 6.59 -51.93 -0.34 1.47 16 26 H 0.03 0.96 6.06 -51.93 -0.31 0.64 16 27 H -0.01 -0.16 6.25 -51.93 -0.32 -0.49 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.68 6.08 -51.92 -0.32 1.37 16 31 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 36 H 0.07 1.51 5.29 -51.93 -0.27 1.24 16 37 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -28.83 281.50 -8.05 -36.88 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.35 Total: -1.31 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.65 Total: -18.14 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.27 Total: -38.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.83 -8.05 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308431633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.726 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds