Wall clock time and date at job start Sun Mar 29 2020 21:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47201 * 2 1 4 4 C 1.46907 * 111.00059 * 163.87312 * 3 2 1 5 5 C 1.50690 * 109.47104 * 293.95310 * 4 3 2 6 6 H 1.08002 * 120.00417 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99915 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00014 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47185 * 270.00209 * 9 7 5 11 11 H 1.48494 * 109.46919 * 30.00208 * 9 7 5 12 12 H 1.48501 * 109.46614 * 150.00158 * 9 7 5 13 13 C 1.46902 * 110.99781 * 287.82692 * 3 2 1 14 14 H 1.08994 * 110.01764 * 48.81562 * 13 3 2 15 15 C 1.54262 * 110.03152 * 170.20151 * 13 3 2 16 16 C 1.54895 * 104.19414 * 142.89301 * 15 13 3 17 17 C 1.54883 * 102.74939 * 322.05986 * 16 15 13 18 18 H 1.08999 * 110.48957 * 279.12694 * 17 16 15 19 19 C 1.52998 * 110.48479 * 156.61647 * 17 16 15 20 20 C 1.53875 * 110.03260 * 287.42103 * 13 3 2 21 21 H 1.08995 * 109.47584 * 306.47590 * 1 2 3 22 22 H 1.09004 * 109.46983 * 66.47465 * 1 2 3 23 23 H 1.08994 * 109.47091 * 186.47187 * 1 2 3 24 24 H 1.08991 * 109.47575 * 239.99574 * 2 1 3 25 25 H 1.09001 * 109.46755 * 119.99405 * 2 1 3 26 26 H 1.09004 * 109.46609 * 173.94910 * 4 3 2 27 27 H 1.09000 * 109.46827 * 53.95469 * 4 3 2 28 28 H 0.97001 * 119.99805 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.48910 * 261.57544 * 15 13 3 30 30 H 1.09007 * 110.48901 * 24.21788 * 15 13 3 31 31 H 1.09003 * 110.75087 * 80.37884 * 16 15 13 32 32 H 1.09003 * 110.75362 * 203.55527 * 16 15 13 33 33 H 1.09004 * 109.47306 * 61.45593 * 19 17 16 34 34 H 1.08998 * 109.47039 * 181.45181 * 19 17 16 35 35 H 1.09003 * 109.47667 * 301.45718 * 19 17 16 36 36 H 1.08999 * 110.03374 * 0.02562 * 20 13 3 37 37 H 1.08994 * 110.02905 * 121.43102 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4373 1.4422 0.3810 5 6 3.5897 1.0081 1.8159 6 1 2.7205 0.7190 2.3879 7 6 4.8390 0.9799 2.3986 8 7 5.8976 1.3323 1.7022 9 14 5.0279 0.4424 4.1777 10 1 4.9128 1.6259 5.0672 11 1 3.9628 -0.5358 4.5149 12 1 6.3584 -0.1901 4.3649 13 6 1.7993 2.0212 -1.3056 14 1 0.7719 1.8585 -1.6313 15 6 2.0908 3.5332 -1.2126 16 6 2.7540 3.8764 -2.5696 17 6 3.6327 2.6310 -2.8453 18 1 4.5677 2.6929 -2.2884 19 6 3.9112 2.4932 -4.3433 20 6 2.7787 1.4467 -2.3440 21 1 -0.3634 0.6109 0.8263 22 1 -0.3633 0.4102 -0.9423 23 1 -0.3633 -1.0211 0.1158 24 1 1.8934 -0.5138 -0.8898 25 1 1.8932 -0.5138 0.8901 26 1 3.8026 2.4631 0.2693 27 1 4.0136 0.7777 -0.2629 28 1 6.7764 1.3129 2.1123 29 1 1.1641 4.0935 -1.0883 30 1 2.7758 3.7398 -0.3901 31 1 2.0006 3.9977 -3.3480 32 1 3.3668 4.7738 -2.4841 33 1 4.4567 3.3696 -4.6936 34 1 4.5082 1.5988 -4.5211 35 1 2.9674 2.4133 -4.8827 36 1 3.4173 0.6954 -1.8793 37 1 2.2267 1.0059 -3.1740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308431633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:31 Heat of formation + Delta-G solvation = -34.459421 kcal Electronic energy + Delta-G solvation = -14919.563153 eV Core-core repulsion = 12695.181866 eV Total energy + Delta-G solvation = -2224.381287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.40750 -36.81017 -34.70319 -32.10104 -31.06113 -29.47047 -27.57522 -25.67463 -24.32635 -22.64907 -20.97581 -19.68174 -18.69896 -16.91125 -16.84792 -16.08142 -15.54520 -15.02158 -14.96518 -14.49907 -14.20566 -14.02828 -13.52197 -13.06552 -12.89939 -12.80703 -12.59101 -12.38686 -12.27065 -12.08982 -12.01578 -11.67739 -11.64086 -11.49119 -11.29385 -11.16887 -11.03307 -10.55254 -8.84509 -8.18555 -6.27636 1.38886 1.40411 1.51284 2.40079 3.13005 3.34443 3.72013 3.81290 4.04833 4.26605 4.45840 4.52894 4.59668 4.61104 4.64333 4.73078 4.75885 4.76900 4.93957 4.99733 5.05811 5.10616 5.17155 5.20698 5.23685 5.32788 5.35156 5.41613 5.45900 5.60161 5.62452 5.68858 6.14131 6.46908 6.79695 6.91046 7.41365 8.91844 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.009819 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.257546 B = 2851.043484 C = 3417.127576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 N -0.538 5.538 4 C 0.214 3.786 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.092 0.908 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.098 4.098 18 H 0.037 0.963 19 C -0.133 4.133 20 C -0.148 4.148 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.019 0.981 25 H 0.053 0.947 26 H 0.008 0.992 27 H -0.037 1.037 28 H 0.263 0.737 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 1.486 -9.159 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.262 5.262 4 C 0.088 3.912 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.190 1.190 12 H -0.208 1.208 13 C -0.033 4.033 14 H 0.110 0.890 15 C -0.156 4.156 16 C -0.144 4.144 17 C -0.117 4.117 18 H 0.055 0.945 19 C -0.190 4.190 20 C -0.187 4.187 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.026 0.974 27 H -0.019 1.019 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.325 1.751 -8.783 12.228 hybrid contribution 1.287 -0.797 0.532 1.604 sum -7.038 0.955 -8.251 10.887 Atomic orbital electron populations 1.21684 0.93346 1.01849 1.01950 1.21975 0.96695 0.89488 0.99394 1.62296 1.19733 1.16999 1.27159 1.19298 0.83719 0.94417 0.93812 1.21555 0.92896 1.43867 0.97995 0.92340 1.25881 0.95498 0.95642 1.02636 1.70098 0.99070 1.49713 1.38494 0.85446 0.77458 0.78625 0.79476 1.19909 1.18957 1.20773 1.22491 0.98723 0.94551 0.87544 0.88956 1.22427 1.00634 0.94905 0.97618 1.22501 0.98579 0.96689 0.96655 1.21894 0.97368 0.95329 0.97073 0.94460 1.21730 1.02108 1.01557 0.93595 1.22856 0.98440 0.98190 0.99185 0.92823 0.92082 0.91231 0.96293 0.92804 0.97393 1.01906 0.92862 0.90322 0.93922 0.89108 0.91564 0.91808 0.93507 0.91039 0.94662 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.86 71.98 0.71 -3.24 16 2 C 0.05 2.10 5.37 86.30 0.46 2.56 16 3 N -0.54 -23.77 4.42 -871.30 -3.85 -27.62 16 4 C 0.21 11.62 3.86 85.55 0.33 11.95 16 5 C -0.52 -30.64 8.28 25.60 0.21 -30.42 16 6 H 0.06 3.37 7.26 -2.91 -0.02 3.35 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 9 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.08 2.72 2.85 45.64 0.13 2.85 16 14 H 0.09 2.87 6.55 -2.39 -0.02 2.86 16 15 C -0.12 -4.05 6.28 31.67 0.20 -3.85 16 16 C -0.11 -3.02 6.33 31.89 0.20 -2.82 16 17 C -0.10 -3.16 3.46 -9.69 -0.03 -3.20 16 18 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 19 C -0.13 -3.28 9.12 71.98 0.66 -2.62 16 20 C -0.15 -5.17 4.85 31.36 0.15 -5.02 16 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.62 6.85 -2.38 -0.02 1.60 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.02 0.74 7.01 -2.39 -0.02 0.72 16 25 H 0.05 2.42 6.59 -2.39 -0.02 2.41 16 26 H 0.01 0.48 6.06 -2.39 -0.01 0.46 16 27 H -0.04 -2.18 6.25 -2.39 -0.01 -2.19 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.80 6.08 -2.38 -0.01 1.79 16 31 H 0.09 2.05 8.06 -2.39 -0.02 2.03 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 36 H 0.03 1.50 5.29 -2.39 -0.01 1.49 16 37 H 0.08 2.27 7.82 -2.39 -0.02 2.25 16 Total: -1.00 -64.64 281.50 2.96 -61.68 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.01 Total: 8.90 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.48 Total: -33.28 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -3.57 Total: -84.74 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.64 2.96 -61.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308431633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.220 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds