Wall clock time and date at job start Sun Mar 29 2020 21:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46799 * 2 1 4 4 C 1.46904 * 110.99867 * 199.59320 * 3 2 1 5 5 C 1.52995 * 109.47109 * 66.04786 * 4 3 2 6 6 C 1.50706 * 109.46929 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99942 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00246 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99547 * 0.02562 * 8 6 5 10 10 Si 1.86789 * 120.00143 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47458 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47102 * 120.00413 * 10 8 6 13 13 H 1.48499 * 109.47496 * 239.99863 * 10 8 6 14 14 C 1.46897 * 110.99798 * 75.63786 * 3 2 1 15 15 C 1.52999 * 109.46917 * 199.70360 * 14 3 2 16 16 C 1.52998 * 109.47007 * 174.86272 * 15 14 3 17 17 C 1.53010 * 117.49328 * 243.74321 * 16 15 14 18 18 C 1.53004 * 117.49942 * 175.08832 * 16 15 14 19 19 H 1.09004 * 109.46821 * 174.83584 * 1 2 3 20 20 H 1.08995 * 109.47428 * 294.83489 * 1 2 3 21 21 H 1.08999 * 109.47405 * 54.83814 * 1 2 3 22 22 H 1.09005 * 109.46975 * 240.00372 * 2 1 3 23 23 H 1.08996 * 109.47173 * 120.00584 * 2 1 3 24 24 H 1.08997 * 109.46988 * 186.05091 * 4 3 2 25 25 H 1.09000 * 109.46648 * 306.04772 * 4 3 2 26 26 H 1.09004 * 109.47200 * 299.99778 * 5 4 3 27 27 H 1.08992 * 109.47431 * 60.00132 * 5 4 3 28 28 H 0.97000 * 119.99448 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.47243 * 79.70463 * 14 3 2 30 30 H 1.09003 * 109.47347 * 319.69806 * 14 3 2 31 31 H 1.08994 * 109.47346 * 54.85640 * 15 14 3 32 32 H 1.09002 * 109.46975 * 294.85483 * 15 14 3 33 33 H 1.08994 * 115.55377 * 29.41005 * 16 15 14 34 34 H 1.08994 * 117.50235 * 0.02562 * 17 16 15 35 35 H 1.09006 * 117.49194 * 145.01872 * 17 16 15 36 36 H 1.09005 * 117.49886 * 214.97709 * 18 16 15 37 37 H 1.09004 * 117.49733 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4507 -0.4599 5 6 3.4845 1.0395 -1.9318 6 6 4.9143 1.1063 -2.4034 7 1 5.6940 1.4120 -1.7216 8 6 5.2269 0.7773 -3.7054 9 7 4.2772 0.4056 -4.5358 10 14 6.9990 0.8608 -4.2900 11 1 7.8691 1.3043 -3.1713 12 1 7.4321 -0.4829 -4.7507 13 1 7.1048 1.8268 -5.4130 14 6 1.8743 1.9947 1.3286 15 6 1.9160 3.5185 1.1977 16 6 1.6371 4.1552 2.5606 17 6 0.3729 5.0064 2.6972 18 6 1.7483 5.6776 2.6653 19 1 -0.3633 -1.0235 -0.0925 20 1 -0.3634 0.4316 0.9326 21 1 -0.3634 0.5918 -0.8401 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.7848 2.4693 -0.3488 25 1 4.0249 0.7737 0.1365 26 1 3.1129 0.0208 -2.0429 27 1 2.8728 1.7164 -2.5282 28 1 4.4972 0.1738 -5.4516 29 1 2.6893 1.6628 1.9717 30 1 0.9217 1.6935 1.7644 31 1 1.1593 3.8427 0.4834 32 1 2.9014 3.8263 0.8478 33 1 1.9440 3.5676 3.4258 34 1 -0.2601 5.1123 1.8163 35 1 -0.1515 4.9788 3.6525 36 1 2.1281 6.0915 3.5994 37 1 2.0206 6.2255 1.7631 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308491875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:01 Heat of formation + Delta-G solvation = 5.819530 kcal Electronic energy + Delta-G solvation = -14030.320605 eV Core-core repulsion = 11807.685944 eV Total energy + Delta-G solvation = -2222.634661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.14759 -36.80864 -33.12923 -31.24267 -30.51855 -27.73397 -24.44789 -22.94486 -22.37151 -21.36984 -20.26484 -19.52564 -16.41793 -15.67504 -15.01544 -14.76945 -14.39249 -14.10106 -13.71977 -13.49199 -12.94232 -12.10465 -11.88461 -11.70964 -11.55558 -11.32607 -11.30230 -10.98384 -10.97345 -10.82583 -10.52449 -10.37725 -10.12369 -9.87369 -9.59426 -9.27341 -9.05449 -8.30069 -7.64404 -5.97113 -3.99140 3.32635 3.40016 3.44119 3.81891 4.36354 4.52021 4.89917 4.97195 4.98580 5.35634 5.38842 5.47391 5.54704 5.61356 5.68182 5.84075 5.86026 5.92703 6.03403 6.05901 6.10579 6.21525 6.31571 6.34298 6.49461 6.57189 6.60095 6.67531 7.04702 7.58735 7.66954 7.86402 7.95689 8.13459 8.47334 9.08550 9.64357 11.14347 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030677 B = 0.006445 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.525563 B = 4343.465082 C = 5012.690940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.540 5.540 4 C 0.062 3.938 5 C 0.027 3.973 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.058 3.942 15 C -0.084 4.084 16 C -0.148 4.148 17 C -0.182 4.182 18 C -0.184 4.184 19 H 0.051 0.949 20 H 0.044 0.956 21 H 0.062 0.938 22 H 0.086 0.914 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.024 0.976 28 H 0.259 0.741 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 4.674 12.755 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.264 5.264 4 C -0.065 4.065 5 C -0.010 4.010 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.070 4.070 15 C -0.122 4.122 16 C -0.166 4.166 17 C -0.219 4.219 18 C -0.221 4.221 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.105 0.895 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.059 4.879 12.244 14.951 hybrid contribution 1.489 -0.430 0.210 1.564 sum -5.571 4.448 12.454 14.350 Atomic orbital electron populations 1.21757 0.95830 1.00771 1.01648 1.22118 0.95256 0.89669 1.01138 1.62098 1.22987 1.17468 1.23877 1.22353 0.84985 0.99812 0.99351 1.19121 0.96554 0.96772 0.88577 1.21247 0.93436 1.45194 0.96038 0.92803 1.24992 0.97114 0.95370 0.96852 1.69989 1.31936 1.45971 1.05381 0.86555 0.85209 0.77611 0.78733 1.19793 1.21061 1.20993 1.22054 0.99971 0.94417 0.90583 1.21154 1.02522 0.94652 0.93864 1.22329 1.01860 0.92833 0.99610 1.23031 0.90935 1.05171 1.02803 1.22958 1.00614 0.95537 1.02946 0.93036 0.93647 0.91867 0.89545 0.95884 0.92046 0.96462 0.96461 0.95757 0.93094 0.95557 0.91615 0.91014 0.91437 0.88248 0.88753 0.89334 0.89221 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.95 37.16 0.37 -1.71 16 2 C 0.05 0.80 5.55 -3.82 -0.02 0.78 16 3 N -0.54 -10.07 4.37 -234.63 -1.02 -11.10 16 4 C 0.06 1.34 4.72 -3.82 -0.02 1.32 16 5 C 0.03 0.72 4.94 -27.88 -0.14 0.58 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.06 0.89 4.77 -3.83 -0.02 0.87 16 15 C -0.08 -1.20 5.53 -26.73 -0.15 -1.35 16 16 C -0.15 -1.74 5.73 -90.61 -0.52 -2.26 16 17 C -0.18 -1.91 10.18 -26.69 -0.27 -2.18 16 18 C -0.18 -1.96 10.25 -26.69 -0.27 -2.23 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.04 0.60 6.89 -51.93 -0.36 0.24 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.09 1.71 5.88 -51.93 -0.31 1.41 16 23 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 24 H 0.06 1.32 6.72 -51.93 -0.35 0.97 16 25 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.02 0.48 6.25 -51.93 -0.32 0.15 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 30 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 31 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 32 H 0.07 1.05 6.96 -51.93 -0.36 0.69 16 33 H 0.10 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -29.74 296.96 -8.90 -38.64 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.61 Total: -2.59 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.45 Total: -19.85 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.29 Total: -37.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.74 -8.90 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.460 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds