Wall clock time and date at job start Sun Mar 29 2020 21:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46799 * 2 1 4 4 C 1.46904 * 110.99867 * 199.59320 * 3 2 1 5 5 C 1.52995 * 109.47109 * 66.04786 * 4 3 2 6 6 C 1.50706 * 109.46929 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99942 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00246 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99547 * 0.02562 * 8 6 5 10 10 Si 1.86789 * 120.00143 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47458 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47102 * 120.00413 * 10 8 6 13 13 H 1.48499 * 109.47496 * 239.99863 * 10 8 6 14 14 C 1.46897 * 110.99798 * 75.63786 * 3 2 1 15 15 C 1.52999 * 109.46917 * 199.70360 * 14 3 2 16 16 C 1.52998 * 109.47007 * 174.86272 * 15 14 3 17 17 C 1.53010 * 117.49328 * 243.74321 * 16 15 14 18 18 C 1.53004 * 117.49942 * 175.08832 * 16 15 14 19 19 H 1.09004 * 109.46821 * 174.83584 * 1 2 3 20 20 H 1.08995 * 109.47428 * 294.83489 * 1 2 3 21 21 H 1.08999 * 109.47405 * 54.83814 * 1 2 3 22 22 H 1.09005 * 109.46975 * 240.00372 * 2 1 3 23 23 H 1.08996 * 109.47173 * 120.00584 * 2 1 3 24 24 H 1.08997 * 109.46988 * 186.05091 * 4 3 2 25 25 H 1.09000 * 109.46648 * 306.04772 * 4 3 2 26 26 H 1.09004 * 109.47200 * 299.99778 * 5 4 3 27 27 H 1.08992 * 109.47431 * 60.00132 * 5 4 3 28 28 H 0.97000 * 119.99448 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.47243 * 79.70463 * 14 3 2 30 30 H 1.09003 * 109.47347 * 319.69806 * 14 3 2 31 31 H 1.08994 * 109.47346 * 54.85640 * 15 14 3 32 32 H 1.09002 * 109.46975 * 294.85483 * 15 14 3 33 33 H 1.08994 * 115.55377 * 29.41005 * 16 15 14 34 34 H 1.08994 * 117.50235 * 0.02562 * 17 16 15 35 35 H 1.09006 * 117.49194 * 145.01872 * 17 16 15 36 36 H 1.09005 * 117.49886 * 214.97709 * 18 16 15 37 37 H 1.09004 * 117.49733 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4507 -0.4599 5 6 3.4845 1.0395 -1.9318 6 6 4.9143 1.1063 -2.4034 7 1 5.6940 1.4120 -1.7216 8 6 5.2269 0.7773 -3.7054 9 7 4.2772 0.4056 -4.5358 10 14 6.9990 0.8608 -4.2900 11 1 7.8691 1.3043 -3.1713 12 1 7.4321 -0.4829 -4.7507 13 1 7.1048 1.8268 -5.4130 14 6 1.8743 1.9947 1.3286 15 6 1.9160 3.5185 1.1977 16 6 1.6371 4.1552 2.5606 17 6 0.3729 5.0064 2.6972 18 6 1.7483 5.6776 2.6653 19 1 -0.3633 -1.0235 -0.0925 20 1 -0.3634 0.4316 0.9326 21 1 -0.3634 0.5918 -0.8401 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.7848 2.4693 -0.3488 25 1 4.0249 0.7737 0.1365 26 1 3.1129 0.0208 -2.0429 27 1 2.8728 1.7164 -2.5282 28 1 4.4972 0.1738 -5.4516 29 1 2.6893 1.6628 1.9717 30 1 0.9217 1.6935 1.7644 31 1 1.1593 3.8427 0.4834 32 1 2.9014 3.8263 0.8478 33 1 1.9440 3.5676 3.4258 34 1 -0.2601 5.1123 1.8163 35 1 -0.1515 4.9788 3.6525 36 1 2.1281 6.0915 3.5994 37 1 2.0206 6.2255 1.7631 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308491875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:01 Heat of formation + Delta-G solvation = -11.154133 kcal Electronic energy + Delta-G solvation = -14031.056638 eV Core-core repulsion = 11807.685944 eV Total energy + Delta-G solvation = -2223.370694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42971 -37.95631 -35.25734 -32.51173 -32.32649 -29.32889 -26.35667 -24.21210 -23.29404 -23.05430 -21.24819 -21.12656 -18.57865 -16.81340 -16.62769 -16.26223 -15.97276 -15.47500 -15.10394 -14.78115 -14.47091 -14.03101 -13.41254 -13.25087 -12.85493 -12.71831 -12.61044 -12.41671 -12.38404 -12.29809 -12.06668 -11.77015 -11.68566 -11.29006 -11.20351 -10.98408 -10.67566 -10.51916 -9.14679 -8.20274 -6.31557 1.39689 1.40183 1.53570 2.40108 2.92789 3.08825 3.13010 3.87405 4.05770 4.06318 4.14038 4.26792 4.36815 4.40371 4.55780 4.61445 4.65049 4.81113 4.82700 4.85177 4.91453 5.05353 5.10147 5.11399 5.18835 5.21954 5.31587 5.38539 5.46768 5.49594 5.69226 5.79799 6.13749 6.35978 6.39145 6.85734 7.37515 8.92179 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030677 B = 0.006445 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.525563 B = 4343.465082 C = 5012.690940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.044 3.956 3 N -0.552 5.552 4 C 0.080 3.920 5 C 0.036 3.964 6 C -0.544 4.544 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.061 3.939 15 C -0.079 4.079 16 C -0.157 4.157 17 C -0.174 4.174 18 C -0.183 4.183 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.016 0.984 26 H -0.004 1.004 27 H -0.010 1.010 28 H 0.264 0.736 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 5.093 14.336 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 N -0.277 5.277 4 C -0.048 4.048 5 C -0.001 4.001 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.791 3.209 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.066 4.066 15 C -0.117 4.117 16 C -0.176 4.176 17 C -0.211 4.211 18 C -0.220 4.220 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.034 0.966 26 H 0.014 0.986 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.846 5.302 13.844 16.329 hybrid contribution 1.362 -0.566 -0.280 1.501 sum -5.484 4.736 13.564 15.378 Atomic orbital electron populations 1.21685 0.93327 1.01965 1.02092 1.22144 0.97284 0.88830 1.00133 1.62058 1.20703 1.18543 1.26351 1.21967 0.87176 0.99429 0.96222 1.18945 0.95118 0.94704 0.91363 1.21654 0.94453 1.45443 0.96703 0.92359 1.25960 1.02081 0.94633 0.96938 1.70123 1.34516 1.46656 1.05887 0.85380 0.79224 0.77931 0.78385 1.18625 1.20254 1.20277 1.22126 1.01082 0.94748 0.88662 1.21056 1.01106 0.94143 0.95363 1.22236 1.03593 0.93565 0.98213 1.23102 0.90611 1.03745 1.03611 1.23038 1.00893 0.94542 1.03491 0.91167 0.91576 0.93301 0.92877 0.94487 0.92012 0.96602 0.98602 0.99128 0.92748 0.95165 0.89600 0.92155 0.93291 0.87212 0.89125 0.87480 0.87592 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.95 71.98 0.72 -2.99 16 2 C 0.04 1.52 5.55 86.30 0.48 2.00 16 3 N -0.55 -20.64 4.37 -896.24 -3.91 -24.55 16 4 C 0.08 3.53 4.72 86.30 0.41 3.93 16 5 C 0.04 1.99 4.94 29.85 0.15 2.14 16 6 C -0.54 -31.87 9.11 25.60 0.23 -31.63 16 7 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 8 C 0.00 0.10 5.46 84.65 0.46 0.57 16 9 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 10 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.06 1.80 4.77 86.30 0.41 2.21 16 15 C -0.08 -2.19 5.53 30.59 0.17 -2.02 16 16 C -0.16 -3.40 5.73 -10.79 -0.06 -3.46 16 17 C -0.17 -3.22 10.18 30.62 0.31 -2.91 16 18 C -0.18 -3.53 10.25 30.62 0.31 -3.22 16 19 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.07 1.56 6.89 -2.39 -0.02 1.55 16 21 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.05 2.19 5.88 -2.38 -0.01 2.17 16 23 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 24 H 0.06 2.70 6.72 -2.39 -0.02 2.68 16 25 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 26 H 0.00 -0.25 6.25 -2.38 -0.01 -0.26 16 27 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.03 0.88 8.00 -2.39 -0.02 0.86 16 30 H 0.09 2.20 6.55 -2.39 -0.02 2.18 16 31 H 0.06 1.80 7.88 -2.39 -0.02 1.78 16 32 H 0.05 1.52 6.96 -2.39 -0.02 1.51 16 33 H 0.11 2.16 8.07 -2.39 -0.02 2.15 16 34 H 0.09 1.75 8.03 -2.39 -0.02 1.73 16 35 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -64.52 296.96 2.99 -61.53 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.00 Total: 8.97 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 3.59 Total: -35.39 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -3.63 Total: -82.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.52 2.99 -61.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.377 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds