Wall clock time and date at job start Sun Mar 29 2020 21:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.32970 * 2 1 4 4 C 1.54906 * 110.37329 * 237.62789 * 2 1 3 5 5 C 1.55138 * 101.65090 * 204.10092 * 4 2 1 6 6 C 1.54322 * 103.02098 * 35.65227 * 5 4 2 7 7 C 1.52999 * 109.88950 * 218.30947 * 6 5 4 8 8 C 1.53005 * 109.88765 * 97.12199 * 6 5 4 9 9 N 1.47435 * 107.23248 * 337.71902 * 6 5 4 10 10 C 1.46894 * 110.99967 * 236.74131 * 9 6 5 11 11 C 1.53001 * 109.47462 * 190.40202 * 10 9 6 12 12 C 1.50703 * 109.47604 * 174.62632 * 11 10 9 13 13 H 1.08006 * 119.99596 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00022 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00176 * 359.72533 * 14 12 11 16 16 Si 1.86807 * 119.99681 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46957 * 59.99930 * 16 14 12 18 18 H 1.48505 * 109.46881 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46960 * 299.99893 * 16 14 12 20 20 H 1.08999 * 109.47222 * 304.21772 * 1 2 3 21 21 H 1.08999 * 109.47053 * 64.22191 * 1 2 3 22 22 H 1.09008 * 109.47186 * 184.21440 * 1 2 3 23 23 H 1.09002 * 110.99231 * 322.18912 * 4 2 1 24 24 H 1.08998 * 110.99380 * 86.01034 * 4 2 1 25 25 H 1.09008 * 110.70824 * 154.03701 * 5 4 2 26 26 H 1.09003 * 110.70563 * 277.09613 * 5 4 2 27 27 H 1.08994 * 109.46944 * 182.37399 * 7 6 5 28 28 H 1.09000 * 109.47229 * 302.37049 * 7 6 5 29 29 H 1.09000 * 109.46755 * 62.37205 * 7 6 5 30 30 H 1.09000 * 109.46728 * 302.23388 * 8 6 5 31 31 H 1.09000 * 109.47186 * 62.22795 * 8 6 5 32 32 H 1.08994 * 109.47308 * 182.23277 * 8 6 5 33 33 H 1.08996 * 109.47783 * 70.40195 * 10 9 6 34 34 H 1.09003 * 109.47260 * 310.39985 * 10 9 6 35 35 H 1.09007 * 109.47013 * 54.62493 * 11 10 9 36 36 H 1.09001 * 109.47126 * 294.62849 * 11 10 9 37 37 H 0.97006 * 120.00117 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7775 -1.2265 5 6 3.4786 -1.2003 -0.7345 6 6 3.2535 -1.4799 0.7664 7 6 4.4583 -0.9915 1.5732 8 6 3.0458 -2.9790 0.9911 9 7 2.0447 -0.7397 1.1721 10 6 2.3357 0.1740 2.2849 11 6 1.0245 0.7270 2.8470 12 6 1.3133 1.5592 4.0697 13 1 2.3305 1.6818 4.4115 14 6 0.2792 2.1640 4.7520 15 7 -0.9589 2.0192 4.3327 16 14 0.6373 3.1950 6.2681 17 1 1.5320 4.3216 5.9005 18 1 -0.6355 3.7308 6.8143 19 1 1.2998 2.3514 7.2951 20 1 -0.3633 0.5779 0.8498 21 1 -0.3633 0.4469 -0.9254 22 1 -0.3634 -1.0250 0.0755 23 1 1.4516 -1.6503 -1.4380 24 1 2.1389 -0.1293 -2.1000 25 1 3.8120 -2.1017 -1.2488 26 1 4.1948 -0.3907 -0.8753 27 1 4.3110 -1.2301 2.6264 28 1 5.3612 -1.4839 1.2120 29 1 4.5609 0.0872 1.4559 30 1 2.1983 -3.3213 0.3973 31 1 3.9429 -3.5194 0.6890 32 1 2.8482 -3.1642 2.0468 33 1 2.9534 0.9976 1.9269 34 1 2.8679 -0.3655 3.0684 35 1 0.3676 -0.0999 3.1171 36 1 0.5383 1.3459 2.0929 37 1 -1.6865 2.4444 4.8130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334866836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:05 Heat of formation + Delta-G solvation = -10.767297 kcal Electronic energy + Delta-G solvation = -14931.635101 eV Core-core repulsion = 12708.281182 eV Total energy + Delta-G solvation = -2223.353920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.55271 -33.77634 -33.04745 -31.83208 -28.48322 -27.94074 -27.03785 -24.06277 -23.26184 -20.75948 -19.95411 -18.20216 -16.29080 -15.51917 -14.92486 -14.39513 -14.28479 -13.62166 -13.08982 -12.83264 -12.46798 -12.36365 -12.03512 -11.73336 -11.53442 -11.29183 -11.16651 -10.96612 -10.90644 -10.71587 -10.47693 -10.33115 -10.24426 -10.12289 -9.62348 -9.22971 -8.93203 -8.27662 -7.59829 -5.94851 -3.96594 3.35598 3.39931 3.42287 4.38631 4.54272 4.89960 4.99995 5.19832 5.40835 5.49789 5.52494 5.64630 5.80166 5.90219 5.92485 5.98144 6.10665 6.12104 6.15456 6.20493 6.32684 6.35315 6.40785 6.48270 6.54789 6.71434 6.75034 6.95743 7.13861 7.66580 7.71911 7.87640 7.99842 8.17523 8.50740 9.10736 9.66419 11.16382 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.008177 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.215884 B = 3423.388561 C = 3808.035307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.049 0.951 4 C -0.126 4.126 5 C -0.132 4.132 6 C 0.091 3.909 7 C -0.161 4.161 8 C -0.123 4.123 9 N -0.516 5.516 10 C 0.057 3.943 11 C 0.027 3.973 12 C -0.521 4.521 13 H 0.051 0.949 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.079 0.921 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 -6.344 -9.484 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 H 0.067 0.933 4 C -0.164 4.164 5 C -0.170 4.170 6 C 0.001 3.999 7 C -0.219 4.219 8 C -0.181 4.181 9 N -0.241 5.241 10 C -0.070 4.070 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.097 0.903 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.756 -6.636 -9.254 13.241 hybrid contribution 0.770 1.232 0.649 1.592 sum 7.526 -5.404 -8.605 12.645 Atomic orbital electron populations 1.21901 0.94019 1.02302 1.01763 1.22472 0.96333 0.95561 0.88908 0.93274 1.22757 0.95961 1.00158 0.97500 1.22861 0.97344 1.00973 0.95867 1.21713 0.89780 0.95255 0.93125 1.22357 0.97203 1.01278 1.01018 1.21712 1.00319 0.93961 1.02107 1.63633 1.26737 1.27072 1.06672 1.22563 1.00396 0.92503 0.91522 1.19194 0.91280 0.95612 0.94985 1.21195 0.93007 1.30478 1.11314 0.93030 1.24973 0.95123 0.96633 0.97526 1.69959 0.98769 1.44429 1.40087 0.86696 0.77420 0.80648 0.83437 1.20378 1.21296 1.20299 0.90255 0.93730 0.92664 0.91024 0.91665 0.91444 0.91880 0.91599 0.93152 0.92364 0.92654 0.93472 0.92432 0.96316 0.91742 0.95791 0.96138 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.23 37.16 0.34 -2.18 16 2 C 0.08 1.31 2.67 -66.18 -0.18 1.14 16 3 H 0.05 0.92 7.62 -51.93 -0.40 0.52 16 4 C -0.13 -1.74 6.50 -24.59 -0.16 -1.90 16 5 C -0.13 -1.75 6.01 -24.91 -0.15 -1.90 16 6 C 0.09 1.40 1.15 -130.61 -0.15 1.25 16 7 C -0.16 -2.37 7.14 37.16 0.27 -2.10 16 8 C -0.12 -1.72 8.71 37.16 0.32 -1.40 16 9 N -0.52 -9.66 4.47 -207.99 -0.93 -10.59 16 10 C 0.06 1.23 3.62 -3.83 -0.01 1.22 16 11 C 0.03 0.70 4.18 -27.88 -0.12 0.58 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H 0.08 1.68 5.46 -51.93 -0.28 1.40 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 23 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.78 7.83 -51.92 -0.41 0.37 16 26 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 27 H 0.07 1.03 6.62 -51.93 -0.34 0.68 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.02 0.41 6.75 -51.93 -0.35 0.06 16 34 H 0.06 1.39 6.13 -51.93 -0.32 1.08 16 35 H 0.02 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.02 0.56 5.80 -51.93 -0.30 0.26 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -29.67 282.39 -7.70 -37.37 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.50 Total: -2.66 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.25 Total: -18.97 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.19 Total: -36.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.67 -7.70 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334866836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.603 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds