Wall clock time and date at job start Sun Mar 29 2020 21:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.32970 * 2 1 4 4 C 1.54906 * 110.37329 * 237.62789 * 2 1 3 5 5 C 1.55138 * 101.65090 * 204.10092 * 4 2 1 6 6 C 1.54322 * 103.02098 * 35.65227 * 5 4 2 7 7 C 1.52999 * 109.88950 * 218.30947 * 6 5 4 8 8 C 1.53005 * 109.88765 * 97.12199 * 6 5 4 9 9 N 1.47435 * 107.23248 * 337.71902 * 6 5 4 10 10 C 1.46894 * 110.99967 * 236.74131 * 9 6 5 11 11 C 1.53001 * 109.47462 * 190.40202 * 10 9 6 12 12 C 1.50703 * 109.47604 * 174.62632 * 11 10 9 13 13 H 1.08006 * 119.99596 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00022 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00176 * 359.72533 * 14 12 11 16 16 Si 1.86807 * 119.99681 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46957 * 59.99930 * 16 14 12 18 18 H 1.48505 * 109.46881 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46960 * 299.99893 * 16 14 12 20 20 H 1.08999 * 109.47222 * 304.21772 * 1 2 3 21 21 H 1.08999 * 109.47053 * 64.22191 * 1 2 3 22 22 H 1.09008 * 109.47186 * 184.21440 * 1 2 3 23 23 H 1.09002 * 110.99231 * 322.18912 * 4 2 1 24 24 H 1.08998 * 110.99380 * 86.01034 * 4 2 1 25 25 H 1.09008 * 110.70824 * 154.03701 * 5 4 2 26 26 H 1.09003 * 110.70563 * 277.09613 * 5 4 2 27 27 H 1.08994 * 109.46944 * 182.37399 * 7 6 5 28 28 H 1.09000 * 109.47229 * 302.37049 * 7 6 5 29 29 H 1.09000 * 109.46755 * 62.37205 * 7 6 5 30 30 H 1.09000 * 109.46728 * 302.23388 * 8 6 5 31 31 H 1.09000 * 109.47186 * 62.22795 * 8 6 5 32 32 H 1.08994 * 109.47308 * 182.23277 * 8 6 5 33 33 H 1.08996 * 109.47783 * 70.40195 * 10 9 6 34 34 H 1.09003 * 109.47260 * 310.39985 * 10 9 6 35 35 H 1.09007 * 109.47013 * 54.62493 * 11 10 9 36 36 H 1.09001 * 109.47126 * 294.62849 * 11 10 9 37 37 H 0.97006 * 120.00117 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7775 -1.2265 5 6 3.4786 -1.2003 -0.7345 6 6 3.2535 -1.4799 0.7664 7 6 4.4583 -0.9915 1.5732 8 6 3.0458 -2.9790 0.9911 9 7 2.0447 -0.7397 1.1721 10 6 2.3357 0.1740 2.2849 11 6 1.0245 0.7270 2.8470 12 6 1.3133 1.5592 4.0697 13 1 2.3305 1.6818 4.4115 14 6 0.2792 2.1640 4.7520 15 7 -0.9589 2.0192 4.3327 16 14 0.6373 3.1950 6.2681 17 1 1.5320 4.3216 5.9005 18 1 -0.6355 3.7308 6.8143 19 1 1.2998 2.3514 7.2951 20 1 -0.3633 0.5779 0.8498 21 1 -0.3633 0.4469 -0.9254 22 1 -0.3634 -1.0250 0.0755 23 1 1.4516 -1.6503 -1.4380 24 1 2.1389 -0.1293 -2.1000 25 1 3.8120 -2.1017 -1.2488 26 1 4.1948 -0.3907 -0.8753 27 1 4.3110 -1.2301 2.6264 28 1 5.3612 -1.4839 1.2120 29 1 4.5609 0.0872 1.4559 30 1 2.1983 -3.3213 0.3973 31 1 3.9429 -3.5194 0.6890 32 1 2.8482 -3.1642 2.0468 33 1 2.9534 0.9976 1.9269 34 1 2.8679 -0.3655 3.0684 35 1 0.3676 -0.0999 3.1171 36 1 0.5383 1.3459 2.0929 37 1 -1.6865 2.4444 4.8130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334866836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:05 Heat of formation + Delta-G solvation = -28.980819 kcal Electronic energy + Delta-G solvation = -14932.424899 eV Core-core repulsion = 12708.281182 eV Total energy + Delta-G solvation = -2224.143717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88545 -35.71880 -34.38618 -33.64401 -30.21347 -29.37474 -28.22546 -26.07278 -24.45352 -22.55467 -21.34597 -19.60868 -18.40324 -16.90027 -16.53894 -16.18128 -15.85190 -14.92973 -14.41672 -14.39013 -14.00479 -13.89196 -13.47870 -13.19438 -13.02477 -12.95897 -12.67841 -12.51173 -12.43763 -12.28484 -12.17793 -11.66107 -11.59310 -11.40844 -11.34243 -11.15583 -10.93998 -10.50416 -9.08288 -8.18630 -6.29765 1.38218 1.41620 1.49474 2.40014 3.08926 3.13997 3.70409 3.81096 4.05054 4.24767 4.35009 4.44450 4.47261 4.60609 4.62040 4.75186 4.83079 4.87537 4.91755 4.96216 4.99051 5.03101 5.11804 5.16757 5.24116 5.30361 5.40627 5.43131 5.52514 5.58140 5.76397 5.87189 6.18970 6.42114 6.44830 6.87832 7.38661 8.92931 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.008177 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.215884 B = 3423.388561 C = 3808.035307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 H 0.031 0.969 4 C -0.115 4.115 5 C -0.124 4.124 6 C 0.080 3.920 7 C -0.157 4.157 8 C -0.119 4.119 9 N -0.532 5.532 10 C 0.078 3.922 11 C 0.038 3.962 12 C -0.547 4.547 13 H 0.056 0.944 14 C 0.002 3.998 15 N -0.929 5.929 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.267 1.267 20 H 0.033 0.967 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.061 0.939 35 H -0.013 1.013 36 H 0.000 1.000 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 -6.842 -10.361 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.040 4.040 3 H 0.049 0.951 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.008 4.008 7 C -0.215 4.215 8 C -0.176 4.176 9 N -0.257 5.257 10 C -0.050 4.050 11 C 0.001 3.999 12 C -0.585 4.585 13 H 0.074 0.926 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.192 1.192 20 H 0.052 0.948 21 H 0.088 0.912 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.006 0.994 36 H 0.018 0.982 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.457 -7.146 -10.143 15.015 hybrid contribution 0.209 1.356 0.892 1.637 sum 8.666 -5.790 -9.251 13.936 Atomic orbital electron populations 1.21810 0.94843 1.01628 1.01022 1.22545 0.95749 0.95289 0.90462 0.95066 1.22712 0.96180 1.00201 0.96173 1.22842 0.96997 1.02462 0.93912 1.21953 0.88406 0.95501 0.94989 1.22305 0.98310 1.00716 1.00171 1.21688 1.01780 0.93134 1.01042 1.63555 1.29061 1.26427 1.06634 1.22151 0.97283 0.92837 0.92704 1.18997 0.92870 0.93867 0.94177 1.21637 0.93417 1.31095 1.12355 0.92575 1.25936 0.94790 0.97848 1.00993 1.70106 0.99826 1.45373 1.41630 0.85531 0.77587 0.78960 0.79133 1.19238 1.20668 1.19238 0.94783 0.91197 0.92575 0.90173 0.89515 0.88608 0.91353 0.93136 0.90148 0.93645 0.92673 0.90452 0.94261 0.96629 0.92017 0.99423 0.98196 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.23 71.98 0.66 -4.26 16 2 C 0.07 2.34 2.67 45.39 0.12 2.46 16 3 H 0.03 1.18 7.62 -2.39 -0.02 1.17 16 4 C -0.11 -2.85 6.50 31.98 0.21 -2.64 16 5 C -0.12 -2.85 6.01 31.78 0.19 -2.66 16 6 C 0.08 2.32 1.15 3.87 0.00 2.33 16 7 C -0.16 -4.38 7.14 71.98 0.51 -3.87 16 8 C -0.12 -3.05 8.71 71.98 0.63 -2.42 16 9 N -0.53 -20.00 4.47 -811.94 -3.63 -23.62 16 10 C 0.08 3.48 3.62 86.30 0.31 3.79 16 11 C 0.04 2.12 4.18 29.85 0.12 2.25 16 12 C -0.55 -32.30 9.11 25.60 0.23 -32.06 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.00 0.14 5.46 84.65 0.46 0.60 16 15 N -0.93 -57.99 13.29 21.44 0.28 -57.70 16 16 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H 0.03 1.53 5.46 -2.39 -0.01 1.51 16 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16 23 H 0.08 1.88 8.06 -2.39 -0.02 1.86 16 24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.10 1.72 7.83 -2.38 -0.02 1.70 16 26 H 0.07 1.52 7.86 -2.39 -0.02 1.51 16 27 H 0.05 1.54 6.62 -2.39 -0.02 1.53 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.36 6.73 -2.39 -0.02 1.35 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.02 0.70 6.75 -2.39 -0.02 0.68 16 34 H 0.06 2.75 6.13 -2.39 -0.01 2.74 16 35 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 36 H 0.00 -0.01 5.80 -2.39 -0.01 -0.02 16 37 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -65.93 282.39 3.15 -62.77 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.01 Total: 7.67 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.46 Total: -36.48 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.34 Total: -81.33 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -65.93 3.15 -62.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334866836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.793 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds