Wall clock time and date at job start Sun Mar 29 2020 21:37:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08997 * 110.32970 * 2 1
4 4 C 1.54906 * 110.37329 * 237.62789 * 2 1 3
5 5 C 1.55138 * 101.65090 * 204.10092 * 4 2 1
6 6 C 1.54322 * 103.02098 * 35.65227 * 5 4 2
7 7 C 1.52999 * 109.88950 * 218.30947 * 6 5 4
8 8 C 1.53005 * 109.88765 * 97.12199 * 6 5 4
9 9 N 1.47435 * 107.23248 * 337.71902 * 6 5 4
10 10 C 1.46894 * 110.99967 * 236.74131 * 9 6 5
11 11 C 1.53001 * 109.47462 * 190.40202 * 10 9 6
12 12 C 1.50703 * 109.47604 * 174.62632 * 11 10 9
13 13 H 1.08006 * 119.99596 * 0.02562 * 12 11 10
14 14 C 1.37871 * 120.00022 * 180.02562 * 12 11 10
15 15 N 1.31512 * 120.00176 * 359.72533 * 14 12 11
16 16 Si 1.86807 * 119.99681 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.46957 * 59.99930 * 16 14 12
18 18 H 1.48505 * 109.46881 * 180.02562 * 16 14 12
19 19 H 1.48501 * 109.46960 * 299.99893 * 16 14 12
20 20 H 1.08999 * 109.47222 * 304.21772 * 1 2 3
21 21 H 1.08999 * 109.47053 * 64.22191 * 1 2 3
22 22 H 1.09008 * 109.47186 * 184.21440 * 1 2 3
23 23 H 1.09002 * 110.99231 * 322.18912 * 4 2 1
24 24 H 1.08998 * 110.99380 * 86.01034 * 4 2 1
25 25 H 1.09008 * 110.70824 * 154.03701 * 5 4 2
26 26 H 1.09003 * 110.70563 * 277.09613 * 5 4 2
27 27 H 1.08994 * 109.46944 * 182.37399 * 7 6 5
28 28 H 1.09000 * 109.47229 * 302.37049 * 7 6 5
29 29 H 1.09000 * 109.46755 * 62.37205 * 7 6 5
30 30 H 1.09000 * 109.46728 * 302.23388 * 8 6 5
31 31 H 1.09000 * 109.47186 * 62.22795 * 8 6 5
32 32 H 1.08994 * 109.47308 * 182.23277 * 8 6 5
33 33 H 1.08996 * 109.47783 * 70.40195 * 10 9 6
34 34 H 1.09003 * 109.47260 * 310.39985 * 10 9 6
35 35 H 1.09007 * 109.47013 * 54.62493 * 11 10 9
36 36 H 1.09001 * 109.47126 * 294.62849 * 11 10 9
37 37 H 0.97006 * 120.00117 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9087 1.0221 0.0000
4 6 2.0693 -0.7775 -1.2265
5 6 3.4786 -1.2003 -0.7345
6 6 3.2535 -1.4799 0.7664
7 6 4.4583 -0.9915 1.5732
8 6 3.0458 -2.9790 0.9911
9 7 2.0447 -0.7397 1.1721
10 6 2.3357 0.1740 2.2849
11 6 1.0245 0.7270 2.8470
12 6 1.3133 1.5592 4.0697
13 1 2.3305 1.6818 4.4115
14 6 0.2792 2.1640 4.7520
15 7 -0.9589 2.0192 4.3327
16 14 0.6373 3.1950 6.2681
17 1 1.5320 4.3216 5.9005
18 1 -0.6355 3.7308 6.8143
19 1 1.2998 2.3514 7.2951
20 1 -0.3633 0.5779 0.8498
21 1 -0.3633 0.4469 -0.9254
22 1 -0.3634 -1.0250 0.0755
23 1 1.4516 -1.6503 -1.4380
24 1 2.1389 -0.1293 -2.1000
25 1 3.8120 -2.1017 -1.2488
26 1 4.1948 -0.3907 -0.8753
27 1 4.3110 -1.2301 2.6264
28 1 5.3612 -1.4839 1.2120
29 1 4.5609 0.0872 1.4559
30 1 2.1983 -3.3213 0.3973
31 1 3.9429 -3.5194 0.6890
32 1 2.8482 -3.1642 2.0468
33 1 2.9534 0.9976 1.9269
34 1 2.8679 -0.3655 3.0684
35 1 0.3676 -0.0999 3.1171
36 1 0.5383 1.3459 2.0929
37 1 -1.6865 2.4444 4.8130
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000334866836.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:37:05
Heat of formation + Delta-G solvation = -28.980819 kcal
Electronic energy + Delta-G solvation = -14932.424899 eV
Core-core repulsion = 12708.281182 eV
Total energy + Delta-G solvation = -2224.143717 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.88545 -35.71880 -34.38618 -33.64401 -30.21347 -29.37474 -28.22546 -26.07278
-24.45352 -22.55467 -21.34597 -19.60868 -18.40324 -16.90027 -16.53894 -16.18128
-15.85190 -14.92973 -14.41672 -14.39013 -14.00479 -13.89196 -13.47870 -13.19438
-13.02477 -12.95897 -12.67841 -12.51173 -12.43763 -12.28484 -12.17793 -11.66107
-11.59310 -11.40844 -11.34243 -11.15583 -10.93998 -10.50416 -9.08288 -8.18630
-6.29765 1.38218 1.41620 1.49474 2.40014 3.08926 3.13997 3.70409
3.81096 4.05054 4.24767 4.35009 4.44450 4.47261 4.60609 4.62040
4.75186 4.83079 4.87537 4.91755 4.96216 4.99051 5.03101 5.11804
5.16757 5.24116 5.30361 5.40627 5.43131 5.52514 5.58140 5.76397
5.87189 6.18970 6.42114 6.44830 6.87832 7.38661 8.92931
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.041397 B = 0.008177 C = 0.007351
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 676.215884 B = 3423.388561 C = 3808.035307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.068 3.932
3 H 0.031 0.969
4 C -0.115 4.115
5 C -0.124 4.124
6 C 0.080 3.920
7 C -0.157 4.157
8 C -0.119 4.119
9 N -0.532 5.532
10 C 0.078 3.922
11 C 0.038 3.962
12 C -0.547 4.547
13 H 0.056 0.944
14 C 0.002 3.998
15 N -0.929 5.929
16 Si 0.964 3.036
17 H -0.267 1.267
18 H -0.281 1.281
19 H -0.267 1.267
20 H 0.033 0.967
21 H 0.069 0.931
22 H 0.055 0.945
23 H 0.080 0.920
24 H 0.086 0.914
25 H 0.095 0.905
26 H 0.068 0.932
27 H 0.050 0.950
28 H 0.080 0.920
29 H 0.044 0.956
30 H 0.054 0.946
31 H 0.077 0.923
32 H 0.038 0.962
33 H 0.016 0.984
34 H 0.061 0.939
35 H -0.013 1.013
36 H 0.000 1.000
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.002 -6.842 -10.361 15.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.040 4.040
3 H 0.049 0.951
4 C -0.153 4.153
5 C -0.162 4.162
6 C -0.008 4.008
7 C -0.215 4.215
8 C -0.176 4.176
9 N -0.257 5.257
10 C -0.050 4.050
11 C 0.001 3.999
12 C -0.585 4.585
13 H 0.074 0.926
14 C -0.196 4.196
15 N -0.569 5.569
16 Si 0.788 3.212
17 H -0.192 1.192
18 H -0.207 1.207
19 H -0.192 1.192
20 H 0.052 0.948
21 H 0.088 0.912
22 H 0.074 0.926
23 H 0.098 0.902
24 H 0.105 0.895
25 H 0.114 0.886
26 H 0.086 0.914
27 H 0.069 0.931
28 H 0.099 0.901
29 H 0.064 0.936
30 H 0.073 0.927
31 H 0.095 0.905
32 H 0.057 0.943
33 H 0.034 0.966
34 H 0.080 0.920
35 H 0.006 0.994
36 H 0.018 0.982
37 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 8.457 -7.146 -10.143 15.015
hybrid contribution 0.209 1.356 0.892 1.637
sum 8.666 -5.790 -9.251 13.936
Atomic orbital electron populations
1.21810 0.94843 1.01628 1.01022 1.22545 0.95749 0.95289 0.90462
0.95066 1.22712 0.96180 1.00201 0.96173 1.22842 0.96997 1.02462
0.93912 1.21953 0.88406 0.95501 0.94989 1.22305 0.98310 1.00716
1.00171 1.21688 1.01780 0.93134 1.01042 1.63555 1.29061 1.26427
1.06634 1.22151 0.97283 0.92837 0.92704 1.18997 0.92870 0.93867
0.94177 1.21637 0.93417 1.31095 1.12355 0.92575 1.25936 0.94790
0.97848 1.00993 1.70106 0.99826 1.45373 1.41630 0.85531 0.77587
0.78960 0.79133 1.19238 1.20668 1.19238 0.94783 0.91197 0.92575
0.90173 0.89515 0.88608 0.91353 0.93136 0.90148 0.93645 0.92673
0.90452 0.94261 0.96629 0.92017 0.99423 0.98196 0.92830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.92 9.23 71.98 0.66 -4.26 16
2 C 0.07 2.34 2.67 45.39 0.12 2.46 16
3 H 0.03 1.18 7.62 -2.39 -0.02 1.17 16
4 C -0.11 -2.85 6.50 31.98 0.21 -2.64 16
5 C -0.12 -2.85 6.01 31.78 0.19 -2.66 16
6 C 0.08 2.32 1.15 3.87 0.00 2.33 16
7 C -0.16 -4.38 7.14 71.98 0.51 -3.87 16
8 C -0.12 -3.05 8.71 71.98 0.63 -2.42 16
9 N -0.53 -20.00 4.47 -811.94 -3.63 -23.62 16
10 C 0.08 3.48 3.62 86.30 0.31 3.79 16
11 C 0.04 2.12 4.18 29.85 0.12 2.25 16
12 C -0.55 -32.30 9.11 25.60 0.23 -32.06 16
13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16
14 C 0.00 0.14 5.46 84.65 0.46 0.60 16
15 N -0.93 -57.99 13.29 21.44 0.28 -57.70 16
16 Si 0.96 45.34 29.54 68.60 2.03 47.36 16
17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
20 H 0.03 1.53 5.46 -2.39 -0.01 1.51 16
21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
22 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16
23 H 0.08 1.88 8.06 -2.39 -0.02 1.86 16
24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16
25 H 0.10 1.72 7.83 -2.38 -0.02 1.70 16
26 H 0.07 1.52 7.86 -2.39 -0.02 1.51 16
27 H 0.05 1.54 6.62 -2.39 -0.02 1.53 16
28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
29 H 0.04 1.36 6.73 -2.39 -0.02 1.35 16
30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16
33 H 0.02 0.70 6.75 -2.39 -0.02 0.68 16
34 H 0.06 2.75 6.13 -2.39 -0.01 2.74 16
35 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16
36 H 0.00 -0.01 5.80 -2.39 -0.01 -0.02 16
37 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16
Total: -1.00 -65.93 282.39 3.15 -62.77
By element:
Atomic # 1 Polarization: 6.66 SS G_CDS: 1.01 Total: 7.67 kcal
Atomic # 6 Polarization: -39.94 SS G_CDS: 3.46 Total: -36.48 kcal
Atomic # 7 Polarization: -77.99 SS G_CDS: -3.34 Total: -81.33 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal
Total: -65.93 3.15 -62.77 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000334866836.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.793 kcal
(2) G-P(sol) polarization free energy of solvation -65.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds