Wall clock time and date at job start Sun Mar 29 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.72214 * 2 1 4 4 C 1.54940 * 110.66826 * 236.90340 * 2 1 3 5 5 C 1.54594 * 102.92195 * 204.14750 * 4 2 1 6 6 C 1.52993 * 110.31168 * 263.04060 * 5 4 2 7 7 C 1.53002 * 110.39313 * 140.91617 * 5 4 2 8 8 C 1.54001 * 105.14049 * 21.95906 * 5 4 2 9 9 N 1.47901 * 107.05765 * 1.22295 * 8 5 4 10 10 C 1.46895 * 111.00024 * 214.15922 * 9 8 5 11 11 C 1.52998 * 109.47220 * 65.28256 * 10 9 8 12 12 C 1.50704 * 109.46906 * 185.44280 * 11 10 9 13 13 H 1.07995 * 120.00248 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99742 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00310 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47426 * 90.00175 * 16 14 12 18 18 H 1.48501 * 109.47173 * 210.00241 * 16 14 12 19 19 H 1.48504 * 109.47314 * 329.99917 * 16 14 12 20 20 H 1.09002 * 109.47184 * 298.35656 * 1 2 3 21 21 H 1.08997 * 109.47670 * 58.36021 * 1 2 3 22 22 H 1.09008 * 109.47109 * 178.36014 * 1 2 3 23 23 H 1.09000 * 110.72136 * 85.79514 * 4 2 1 24 24 H 1.08994 * 110.72316 * 322.51007 * 4 2 1 25 25 H 1.08999 * 109.47767 * 177.16759 * 6 5 4 26 26 H 1.09001 * 109.47235 * 297.17440 * 6 5 4 27 27 H 1.09003 * 109.47372 * 57.16744 * 6 5 4 28 28 H 1.09005 * 109.46756 * 302.78352 * 7 5 4 29 29 H 1.09004 * 109.46904 * 62.77902 * 7 5 4 30 30 H 1.08994 * 109.47530 * 182.78061 * 7 5 4 31 31 H 1.09002 * 109.91417 * 241.87375 * 8 5 4 32 32 H 1.08994 * 109.91659 * 120.57701 * 8 5 4 33 33 H 1.09004 * 109.46922 * 305.28276 * 10 9 8 34 34 H 1.09005 * 109.47081 * 185.28440 * 10 9 8 35 35 H 1.09002 * 109.47003 * 65.44682 * 11 10 9 36 36 H 1.08995 * 109.47404 * 305.44127 * 11 10 9 37 37 H 0.97004 * 120.00233 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9156 1.0195 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4853 -1.2196 -0.7423 6 6 4.5409 -0.2457 -1.2695 7 6 3.7954 -2.6425 -1.2116 8 6 3.4279 -1.1647 0.7957 9 7 2.0542 -0.7588 1.1643 10 6 2.0580 0.0720 2.3757 11 6 2.7796 1.3901 2.0879 12 6 2.9013 2.1849 3.3625 13 1 2.5041 1.7893 4.2856 14 6 3.5207 3.4166 3.3504 15 7 4.0049 3.8982 2.2265 16 14 3.6721 4.4015 4.9304 17 1 4.9413 4.0471 5.6149 18 1 3.6698 5.8519 4.6118 19 1 2.5254 4.0885 5.8206 20 1 -0.3634 0.4881 0.9044 21 1 -0.3634 0.5391 -0.8749 22 1 -0.3634 -1.0273 -0.0294 23 1 2.1430 -0.1513 -2.0941 24 1 1.4561 -1.6643 -1.4172 25 1 5.5213 -0.5308 -0.8878 26 1 4.5520 -0.2767 -2.3590 27 1 4.3014 0.7645 -0.9373 28 1 3.0299 -3.3230 -0.8385 29 1 3.8072 -2.6712 -2.3012 30 1 4.7697 -2.9469 -0.8295 31 1 4.1440 -0.4321 1.1680 32 1 3.6486 -2.1480 1.2108 33 1 2.5734 -0.4569 3.1774 34 1 1.0312 0.2784 2.6780 35 1 2.2112 1.9631 1.3553 36 1 3.7741 1.1813 1.6937 37 1 4.4403 4.7650 2.2179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335187570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:08 Heat of formation + Delta-G solvation = -18.625509 kcal Electronic energy + Delta-G solvation = -14901.911299 eV Core-core repulsion = 12678.216621 eV Total energy + Delta-G solvation = -2223.694677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36826 -34.68626 -32.81690 -31.36115 -28.82706 -27.07856 -26.38068 -25.08501 -23.24062 -21.49094 -18.84507 -18.56517 -16.58186 -15.20691 -14.64359 -14.34046 -13.88172 -13.84993 -13.20570 -13.08906 -12.65353 -12.24498 -12.17395 -11.70468 -11.53983 -11.40038 -11.17159 -11.03606 -10.83720 -10.64308 -10.54189 -10.30860 -10.08545 -9.92896 -9.84745 -9.58955 -9.09471 -8.33761 -7.46006 -6.01933 -4.04253 3.30538 3.36871 3.40497 4.44034 4.71259 4.89973 5.04732 5.22276 5.33314 5.56324 5.65925 5.81847 5.82428 5.91965 5.98467 6.06616 6.10152 6.18639 6.20249 6.30438 6.34629 6.36121 6.43652 6.53874 6.59147 6.68862 6.76962 6.81161 6.97946 7.51173 7.57744 7.77041 7.85219 8.02162 8.42837 9.02461 9.59632 11.08996 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039016 B = 0.008210 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.476917 B = 3409.817886 C = 3660.410430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 H 0.073 0.927 4 C -0.108 4.108 5 C -0.076 4.076 6 C -0.139 4.139 7 C -0.132 4.132 8 C 0.039 3.961 9 N -0.518 5.518 10 C 0.046 3.954 11 C -0.009 4.009 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -9.216 -6.987 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.077 4.077 6 C -0.196 4.196 7 C -0.189 4.189 8 C -0.089 4.089 9 N -0.241 5.241 10 C -0.081 4.081 11 C -0.046 4.046 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.263 -9.527 -6.925 11.993 hybrid contribution 0.731 1.444 0.778 1.796 sum -1.532 -8.083 -6.147 10.270 Atomic orbital electron populations 1.21606 0.94795 1.01270 1.01154 1.22862 0.95277 0.97662 0.90079 0.90930 1.22638 0.95114 0.99522 0.97317 1.21379 0.95422 0.95326 0.95577 1.21898 0.98059 0.99722 0.99950 1.21825 1.01146 0.95627 1.00301 1.22988 0.91859 1.00648 0.93412 1.65021 1.17800 1.37714 1.03586 1.22383 1.00525 0.94242 0.90977 1.19675 0.95720 0.91885 0.97360 1.21182 1.37157 1.02636 0.94801 0.92664 1.25016 0.95526 0.97688 0.96135 1.69961 1.38841 1.18845 1.25733 0.86604 0.78481 0.79263 0.83731 1.20690 1.21237 1.19843 0.92613 0.93090 0.92736 0.91819 0.91422 0.92846 0.93154 0.91872 0.92555 0.93169 0.92985 0.92183 0.91545 0.92203 0.92048 0.96164 0.96253 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.49 37.15 0.35 -1.70 16 2 C 0.05 0.88 2.68 -65.78 -0.18 0.70 16 3 H 0.07 1.51 5.49 -51.93 -0.29 1.23 16 4 C -0.11 -1.62 5.60 -24.87 -0.14 -1.76 16 5 C -0.08 -1.15 0.97 -153.15 -0.15 -1.30 16 6 C -0.14 -2.09 8.21 37.15 0.30 -1.79 16 7 C -0.13 -1.64 8.22 37.16 0.31 -1.33 16 8 C 0.04 0.69 5.79 -2.75 -0.02 0.68 16 9 N -0.52 -9.81 5.23 -222.62 -1.16 -10.97 16 10 C 0.05 1.00 5.26 -3.83 -0.02 0.98 16 11 C -0.01 -0.22 4.11 -27.88 -0.11 -0.34 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.05 0.93 7.63 -51.93 -0.40 0.54 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.80 8.13 -51.92 -0.42 0.37 16 23 H 0.06 0.89 7.85 -51.93 -0.41 0.49 16 24 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.22 5.34 -51.93 -0.28 0.94 16 32 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 33 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.06 1.33 7.65 -51.93 -0.40 0.93 16 35 H 0.02 0.56 6.26 -51.93 -0.33 0.23 16 36 H 0.02 0.53 6.12 -51.93 -0.32 0.21 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -29.28 285.36 -7.76 -37.04 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.55 Total: -1.68 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -0.06 Total: -19.37 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.43 Total: -37.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.28 -7.76 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335187570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.414 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds