Wall clock time and date at job start Sun Mar 29 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.72214 * 2 1 4 4 C 1.54940 * 110.66826 * 236.90340 * 2 1 3 5 5 C 1.54594 * 102.92195 * 204.14750 * 4 2 1 6 6 C 1.52993 * 110.31168 * 263.04060 * 5 4 2 7 7 C 1.53002 * 110.39313 * 140.91617 * 5 4 2 8 8 C 1.54001 * 105.14049 * 21.95906 * 5 4 2 9 9 N 1.47901 * 107.05765 * 1.22295 * 8 5 4 10 10 C 1.46895 * 111.00024 * 214.15922 * 9 8 5 11 11 C 1.52998 * 109.47220 * 65.28256 * 10 9 8 12 12 C 1.50704 * 109.46906 * 185.44280 * 11 10 9 13 13 H 1.07995 * 120.00248 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99742 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00310 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47426 * 90.00175 * 16 14 12 18 18 H 1.48501 * 109.47173 * 210.00241 * 16 14 12 19 19 H 1.48504 * 109.47314 * 329.99917 * 16 14 12 20 20 H 1.09002 * 109.47184 * 298.35656 * 1 2 3 21 21 H 1.08997 * 109.47670 * 58.36021 * 1 2 3 22 22 H 1.09008 * 109.47109 * 178.36014 * 1 2 3 23 23 H 1.09000 * 110.72136 * 85.79514 * 4 2 1 24 24 H 1.08994 * 110.72316 * 322.51007 * 4 2 1 25 25 H 1.08999 * 109.47767 * 177.16759 * 6 5 4 26 26 H 1.09001 * 109.47235 * 297.17440 * 6 5 4 27 27 H 1.09003 * 109.47372 * 57.16744 * 6 5 4 28 28 H 1.09005 * 109.46756 * 302.78352 * 7 5 4 29 29 H 1.09004 * 109.46904 * 62.77902 * 7 5 4 30 30 H 1.08994 * 109.47530 * 182.78061 * 7 5 4 31 31 H 1.09002 * 109.91417 * 241.87375 * 8 5 4 32 32 H 1.08994 * 109.91659 * 120.57701 * 8 5 4 33 33 H 1.09004 * 109.46922 * 305.28276 * 10 9 8 34 34 H 1.09005 * 109.47081 * 185.28440 * 10 9 8 35 35 H 1.09002 * 109.47003 * 65.44682 * 11 10 9 36 36 H 1.08995 * 109.47404 * 305.44127 * 11 10 9 37 37 H 0.97004 * 120.00233 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9156 1.0195 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4853 -1.2196 -0.7423 6 6 4.5409 -0.2457 -1.2695 7 6 3.7954 -2.6425 -1.2116 8 6 3.4279 -1.1647 0.7957 9 7 2.0542 -0.7588 1.1643 10 6 2.0580 0.0720 2.3757 11 6 2.7796 1.3901 2.0879 12 6 2.9013 2.1849 3.3625 13 1 2.5041 1.7893 4.2856 14 6 3.5207 3.4166 3.3504 15 7 4.0049 3.8982 2.2265 16 14 3.6721 4.4015 4.9304 17 1 4.9413 4.0471 5.6149 18 1 3.6698 5.8519 4.6118 19 1 2.5254 4.0885 5.8206 20 1 -0.3634 0.4881 0.9044 21 1 -0.3634 0.5391 -0.8749 22 1 -0.3634 -1.0273 -0.0294 23 1 2.1430 -0.1513 -2.0941 24 1 1.4561 -1.6643 -1.4172 25 1 5.5213 -0.5308 -0.8878 26 1 4.5520 -0.2767 -2.3590 27 1 4.3014 0.7645 -0.9373 28 1 3.0299 -3.3230 -0.8385 29 1 3.8072 -2.6712 -2.3012 30 1 4.7697 -2.9469 -0.8295 31 1 4.1440 -0.4321 1.1680 32 1 3.6486 -2.1480 1.2108 33 1 2.5734 -0.4569 3.1774 34 1 1.0312 0.2784 2.6780 35 1 2.2112 1.9631 1.3553 36 1 3.7741 1.1813 1.6937 37 1 4.4403 4.7650 2.2179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335187570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:08 Heat of formation + Delta-G solvation = -36.696610 kcal Electronic energy + Delta-G solvation = -14902.694920 eV Core-core repulsion = 12678.216621 eV Total energy + Delta-G solvation = -2224.478299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79377 -36.30279 -34.75229 -32.92045 -30.66643 -28.17902 -27.78837 -26.72847 -25.03472 -23.20814 -20.32477 -19.95885 -18.70358 -16.77637 -16.56210 -15.91851 -15.39892 -15.30595 -14.56211 -14.43088 -14.34351 -13.81176 -13.58702 -13.31551 -13.11920 -12.91543 -12.66058 -12.58082 -12.37374 -12.28221 -12.00016 -11.88142 -11.65622 -11.44183 -11.37691 -11.20010 -11.15575 -10.54133 -9.13533 -8.23402 -6.35368 1.36414 1.37634 1.49006 2.37146 3.08595 3.22245 3.62809 3.76671 3.99545 4.26444 4.39985 4.43016 4.50885 4.67021 4.68565 4.75679 4.81702 4.84524 4.87252 4.92344 4.98422 5.04752 5.09096 5.15535 5.20702 5.32621 5.34643 5.41328 5.49365 5.52615 5.64161 5.73934 6.06001 6.15528 6.34212 6.81169 7.33516 8.87304 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039016 B = 0.008210 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.476917 B = 3409.817886 C = 3660.410430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.042 3.958 3 H 0.032 0.968 4 C -0.099 4.099 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.124 4.124 8 C 0.035 3.965 9 N -0.511 5.511 10 C 0.061 3.939 11 C 0.007 3.993 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.930 5.930 16 Si 0.964 3.036 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 H 0.037 0.963 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.062 0.938 35 H -0.006 1.006 36 H -0.007 1.007 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -10.482 -7.293 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.066 4.066 3 H 0.050 0.950 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.192 4.192 7 C -0.181 4.181 8 C -0.093 4.093 9 N -0.234 5.234 10 C -0.067 4.067 11 C -0.031 4.031 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.789 3.211 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.187 1.187 20 H 0.056 0.944 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.720 -10.809 -7.234 13.288 hybrid contribution 0.890 1.848 0.839 2.216 sum -1.829 -8.961 -6.396 11.161 Atomic orbital electron populations 1.21576 0.92998 1.02452 1.01211 1.22933 0.96753 0.95869 0.91064 0.95033 1.22635 0.94994 0.99944 0.96131 1.21413 0.95512 0.97336 0.93302 1.21856 0.98287 0.97553 1.01515 1.21761 1.01658 0.93124 1.01585 1.23079 0.90235 1.00085 0.95881 1.65081 1.18573 1.36565 1.03131 1.22115 0.99699 0.92483 0.92437 1.19478 0.94374 0.93532 0.95765 1.21629 1.37475 1.03496 0.95749 0.92306 1.25964 0.94916 0.98870 0.99851 1.70101 1.39430 1.19349 1.28121 0.85458 0.78938 0.77508 0.79228 1.19775 1.20626 1.18723 0.94361 0.91222 0.90957 0.90735 0.89234 0.92626 0.90587 0.95775 0.91960 0.91149 0.92386 0.95661 0.90095 0.92357 0.91975 0.98735 0.98838 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 9.49 71.98 0.68 -3.11 16 2 C 0.04 1.50 2.68 45.26 0.12 1.62 16 3 H 0.03 1.40 5.49 -2.39 -0.01 1.38 16 4 C -0.10 -2.79 5.60 31.80 0.18 -2.61 16 5 C -0.08 -2.16 0.97 -51.30 -0.05 -2.21 16 6 C -0.13 -4.04 8.21 71.98 0.59 -3.45 16 7 C -0.12 -2.68 8.22 71.98 0.59 -2.08 16 8 C 0.04 1.26 5.79 86.45 0.50 1.76 16 9 N -0.51 -19.41 5.23 -858.24 -4.49 -23.89 16 10 C 0.06 2.72 5.26 86.30 0.45 3.18 16 11 C 0.01 0.35 4.11 29.85 0.12 0.48 16 12 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 16 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H 0.04 1.27 7.63 -2.39 -0.02 1.25 16 21 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.07 1.94 8.13 -2.38 -0.02 1.92 16 23 H 0.07 1.95 7.85 -2.39 -0.02 1.93 16 24 H 0.09 2.16 7.76 -2.39 -0.02 2.15 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 1.07 5.34 -2.39 -0.01 1.06 16 32 H 0.08 2.61 7.68 -2.39 -0.02 2.59 16 33 H 0.06 2.59 8.13 -2.38 -0.02 2.57 16 34 H 0.06 2.74 7.65 -2.38 -0.02 2.72 16 35 H -0.01 -0.33 6.26 -2.39 -0.01 -0.34 16 36 H -0.01 -0.39 6.12 -2.39 -0.01 -0.40 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -64.48 285.36 2.72 -61.76 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.01 Total: 9.66 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.89 Total: -37.48 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -4.20 Total: -81.02 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.48 2.72 -61.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335187570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.063 kcal (2) G-P(sol) polarization free energy of solvation -64.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds