Wall clock time and date at job start Sun Mar 29 2020 21:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.50699 * 109.46956 * 239.99705 * 2 1 3 5 5 H 1.08006 * 120.00391 * 274.99940 * 4 2 1 6 6 C 1.37880 * 119.99801 * 95.00569 * 4 2 1 7 7 N 1.31511 * 119.99841 * 184.91336 * 6 4 2 8 8 Si 1.86798 * 119.99968 * 4.91089 * 6 4 2 9 9 H 1.48503 * 109.47218 * 84.83122 * 8 6 4 10 10 H 1.48504 * 109.46950 * 204.82888 * 8 6 4 11 11 H 1.48504 * 109.47143 * 324.83158 * 8 6 4 12 12 N 1.46908 * 109.47137 * 119.99898 * 2 1 3 13 13 C 1.46892 * 111.00083 * 275.00188 * 12 2 1 14 14 C 1.50699 * 109.47458 * 179.97438 * 13 12 2 15 15 C 1.33644 * 122.74826 * 94.72697 * 14 13 12 16 16 S 1.76202 * 107.92123 * 179.97438 * 15 14 13 17 17 C 1.70982 * 90.28221 * 0.27921 * 16 15 14 18 18 N 1.29022 * 110.16868 * 359.83549 * 17 16 15 19 19 H 1.09001 * 109.46956 * 295.05621 * 1 2 3 20 20 H 1.08996 * 109.46842 * 55.05218 * 1 2 3 21 21 H 1.09001 * 109.46898 * 175.05434 * 1 2 3 22 22 H 0.97004 * 120.00206 * 180.02562 * 7 6 4 23 23 H 1.00902 * 110.99927 * 151.04044 * 12 2 1 24 24 H 1.09002 * 109.46848 * 299.99836 * 13 12 2 25 25 H 1.09000 * 109.47322 * 59.99316 * 13 12 2 26 26 H 1.07995 * 126.03901 * 0.04378 * 15 14 13 27 27 H 1.07996 * 124.91188 * 179.84294 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3948 -1.7820 10 1 2.1060 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.8750 -0.5313 3.9136 16 16 4.0261 -1.5114 5.3700 17 6 2.3441 -1.8177 5.3486 18 7 1.7962 -1.2219 4.3439 19 1 -0.3633 0.4352 0.9310 20 1 -0.3633 0.5887 -0.8423 21 1 -0.3633 -1.0239 -0.0886 22 1 2.9371 -0.1050 -4.2554 23 1 2.9173 -1.1206 1.0288 24 1 2.7589 1.0461 2.1182 25 1 1.0871 0.6163 2.5525 26 1 4.6805 -0.0264 3.4011 27 1 1.8167 -2.4222 6.0716 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379313607.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:00 Heat of formation + Delta-G solvation = 21.256752 kcal Electronic energy + Delta-G solvation = -11712.830219 eV Core-core repulsion = 9596.525737 eV Total energy + Delta-G solvation = -2116.304482 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.76119 -37.69853 -34.58705 -32.56529 -30.24845 -27.51264 -26.74662 -24.96573 -21.58867 -20.55881 -19.42040 -18.68614 -16.97278 -16.66215 -15.97340 -15.63226 -14.99328 -14.71953 -14.45378 -14.11302 -13.78140 -13.60064 -12.95106 -12.72136 -12.59402 -12.32674 -11.92004 -11.81798 -11.08370 -10.77860 -10.53427 -10.37059 -9.76626 -9.11230 -8.32150 -6.38637 -0.16453 0.54600 0.82047 1.32481 1.35357 1.46282 1.84887 2.31816 3.01739 3.35117 3.68870 4.15620 4.27741 4.45494 4.50917 4.58232 4.82537 4.88754 4.97914 5.08415 5.16533 5.49070 5.67429 6.00052 6.50255 6.64678 6.78846 6.90193 7.30730 8.84625 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.052955 B = 0.007008 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.619673 B = 3994.314095 C = 4096.165187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.184 3.816 3 H 0.010 0.990 4 C -0.523 4.523 5 H 0.033 0.967 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.943 3.057 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.247 1.247 12 N -0.682 5.682 13 C 0.129 3.871 14 C 0.056 3.944 15 C -0.262 4.262 16 S 0.164 5.836 17 C 0.015 3.985 18 N -0.495 5.495 19 H 0.046 0.954 20 H 0.040 0.960 21 H 0.038 0.962 22 H 0.268 0.732 23 H 0.335 0.665 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.189 0.811 27 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 2.615 18.499 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.076 3.924 3 H 0.028 0.972 4 C -0.561 4.561 5 H 0.052 0.948 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.767 3.233 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.170 1.170 12 N -0.314 5.314 13 C -0.002 4.002 14 C -0.076 4.076 15 C -0.402 4.402 16 S 0.417 5.583 17 C -0.283 4.283 18 N -0.209 5.209 19 H 0.065 0.935 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.153 0.847 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.206 0.794 27 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.586 2.023 19.086 19.367 hybrid contribution 0.449 1.338 -1.587 2.124 sum 3.035 3.361 17.499 18.075 Atomic orbital electron populations 1.21751 0.96875 1.00246 0.99054 1.19465 0.93372 0.92170 0.87417 0.97201 1.21236 1.43651 0.94119 0.97112 0.94820 1.25905 0.93904 1.03705 0.94606 1.70051 1.47611 1.38099 1.02619 0.85802 0.80030 0.79779 0.77719 1.18979 1.21133 1.17029 1.60576 1.32961 1.33236 1.04634 1.20459 1.00627 0.92434 0.86693 1.20245 0.89642 0.99776 0.97920 1.27173 1.00881 1.08903 1.03235 1.83609 1.09553 1.43189 1.21984 1.28998 0.96256 1.03108 0.99931 1.66093 1.39664 1.10092 1.05042 0.93467 0.94072 0.94281 0.92333 0.84684 0.93364 0.90532 0.79421 0.75469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 9.42 71.98 0.68 -4.67 15 2 C 0.18 8.73 2.26 44.17 0.10 8.83 15 3 H 0.01 0.48 4.95 -2.39 -0.01 0.47 15 4 C -0.52 -29.91 8.84 25.60 0.23 -29.68 15 5 H 0.03 2.18 8.06 -2.91 -0.02 2.15 15 6 C 0.02 0.99 5.47 84.66 0.46 1.45 15 7 N -0.94 -58.52 13.96 21.45 0.30 -58.22 15 8 Si 0.94 43.39 26.99 68.60 1.85 45.25 15 9 H -0.26 -11.59 7.11 99.48 0.71 -10.89 15 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 11 H -0.25 -10.58 6.82 99.48 0.68 -9.90 15 12 N -0.68 -29.08 6.29 -499.46 -3.14 -32.22 15 13 C 0.13 4.54 5.92 85.56 0.51 5.05 15 14 C 0.06 1.75 6.25 41.52 0.26 2.01 15 15 C -0.26 -6.59 11.12 66.78 0.74 -5.85 15 16 S 0.16 3.07 23.22 -56.49 -1.31 1.76 15 17 C 0.01 0.32 12.23 130.66 1.60 1.92 15 18 N -0.49 -15.32 10.53 -191.55 -2.02 -17.34 15 19 H 0.05 1.83 7.35 -2.39 -0.02 1.81 15 20 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.04 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 23 H 0.34 14.64 8.34 -89.69 -0.75 13.89 15 24 H 0.05 1.57 8.01 -2.39 -0.02 1.55 15 25 H 0.08 2.72 7.36 -2.39 -0.02 2.70 15 26 H 0.19 4.05 8.06 -2.91 -0.02 4.03 15 27 H 0.23 3.10 8.06 -2.91 -0.02 3.07 15 Total: -1.00 -67.51 248.33 0.65 -66.86 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.40 Total: 14.85 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 4.57 Total: -20.93 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -4.86 Total: -107.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.85 Total: 45.25 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -67.51 0.65 -66.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379313607.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.114 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds