Wall clock time and date at job start Sun Mar 29 2020 21:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 S 1.80998 * 109.47146 * 119.99578 * 2 1 3 14 14 C 1.76199 * 100.00463 * 295.00301 * 13 2 1 15 15 N 1.31264 * 125.79856 * 359.69105 * 14 13 2 16 16 C 1.34364 * 109.30593 * 179.83108 * 15 14 13 17 17 C 1.34386 * 108.34230 * 0.43257 * 16 15 14 18 18 N 1.36111 * 125.80514 * 179.97438 * 14 13 2 19 19 H 0.97005 * 126.50117 * 0.02562 * 18 14 13 20 20 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 22 22 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 23 23 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 24 24 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 25 25 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 26 26 H 1.08001 * 125.83161 * 180.14934 * 16 15 14 27 27 H 1.08001 * 126.52443 * 179.75839 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.6839 -1.6881 -1.2263 11 1 6.5872 -1.7620 -3.6486 12 1 6.4855 0.3687 -2.4957 13 16 2.1333 -0.8531 1.4779 14 6 1.5438 0.2423 2.7258 15 7 0.8687 1.3490 2.5195 16 6 0.5844 1.9226 3.7009 17 6 1.1037 1.1594 4.6775 18 7 1.7158 0.0877 4.0671 19 1 2.1818 -0.6393 4.5091 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.6054 -0.2617 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 4.0609 -2.2444 -4.0348 26 1 0.0364 2.8426 3.8414 27 1 1.0506 1.3500 5.7392 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379314576.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:55 Heat of formation + Delta-G solvation = 42.771460 kcal Electronic energy + Delta-G solvation = -11674.136724 eV Core-core repulsion = 9558.765190 eV Total energy + Delta-G solvation = -2115.371534 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.42639 -34.54964 -32.34168 -31.83796 -29.28316 -27.32874 -23.24841 -22.10780 -20.99707 -20.41763 -18.61051 -16.32825 -15.53820 -14.79922 -14.55801 -14.33439 -13.92256 -13.40945 -12.86917 -12.42454 -11.75997 -11.50802 -11.10809 -10.76801 -10.57305 -10.52288 -9.87247 -9.80287 -9.45707 -9.41895 -9.18073 -8.95975 -8.37162 -6.83863 -6.02170 -4.04229 1.87916 2.16008 2.98624 3.29640 3.35260 3.38887 3.42431 3.57975 4.46210 5.10036 5.34987 5.38766 5.68650 5.85692 5.98613 6.15444 6.25181 6.65863 6.70618 6.76972 6.98389 7.35863 7.54322 7.60340 7.95152 8.16139 8.32496 9.00705 9.59830 11.08928 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.048518 B = 0.008056 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.971620 B = 3474.682497 C = 3795.999975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 H 0.089 0.911 4 C 0.036 3.964 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.276 1.276 13 S -0.014 6.014 14 C 0.203 3.797 15 N -0.491 5.491 16 C -0.023 4.023 17 C -0.066 4.066 18 N -0.564 5.564 19 H 0.419 0.581 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.167 0.833 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 3.117 13.228 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 H 0.108 0.892 4 C -0.003 4.003 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.202 1.202 13 S 0.217 5.783 14 C -0.168 4.168 15 N -0.215 5.215 16 C -0.172 4.172 17 C -0.202 4.202 18 N -0.171 5.171 19 H 0.257 0.743 20 H 0.071 0.929 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.184 0.816 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.019 2.351 12.365 13.212 hybrid contribution 0.793 0.633 0.920 1.369 sum -3.226 2.983 13.285 13.993 Atomic orbital electron populations 1.22125 0.94350 1.01676 1.02431 1.23515 0.97346 1.02349 0.94248 0.89234 1.19108 0.96430 0.95635 0.89146 1.21240 0.91567 1.34765 1.08457 0.91907 1.24985 0.98474 0.95134 0.95554 1.69947 1.35727 1.35684 1.12018 0.86642 0.85651 0.78311 0.77373 1.20103 1.21355 1.20177 1.85975 1.68926 1.27919 0.95524 1.26043 1.03428 1.00204 0.87151 1.70845 1.17098 1.06548 1.26996 1.22335 1.04938 1.01596 0.88369 1.22731 1.05931 0.92034 0.99458 1.43454 1.45157 1.22117 1.06384 0.74283 0.92901 0.91429 0.92304 0.94267 0.95570 0.92858 0.81611 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.01 37.15 0.33 -2.43 15 2 C -0.05 -0.97 2.27 -26.74 -0.06 -1.03 15 3 H 0.09 2.02 8.14 -51.91 -0.42 1.60 15 4 C 0.04 0.90 4.44 -27.88 -0.12 0.78 15 5 C -0.52 -14.44 8.53 -34.44 -0.29 -14.74 15 6 H 0.06 1.72 7.60 -52.49 -0.40 1.32 15 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 8 N -0.89 -26.45 13.29 55.43 0.74 -25.72 15 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 15 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 13 S -0.01 -0.28 21.06 -107.50 -2.26 -2.55 15 14 C 0.20 3.59 7.95 -88.75 -0.71 2.88 15 15 N -0.49 -8.94 8.72 -13.45 -0.12 -9.06 15 16 C -0.02 -0.33 11.84 -17.80 -0.21 -0.54 15 17 C -0.07 -0.80 12.04 -16.28 -0.20 -1.00 15 18 N -0.56 -7.73 6.24 -12.69 -0.08 -7.81 15 19 H 0.42 4.46 8.96 -40.82 -0.37 4.10 15 20 H 0.05 0.96 8.14 -51.92 -0.42 0.54 15 21 H 0.07 1.25 5.89 -51.93 -0.31 0.95 15 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.04 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 26 H 0.17 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.17 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 249.31 15.07 3.76 3.76 Total: -1.00 -31.14 249.31 -7.51 -38.65 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.16 Total: 0.59 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.35 Total: -14.47 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.54 Total: -42.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.26 Total: -2.55 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.14 -7.51 -38.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379314576.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.421 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds