Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00140 * 2 1 4 4 H 1.48500 * 109.47256 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46760 * 30.00169 * 3 2 1 6 6 H 1.48499 * 109.46906 * 149.99835 * 3 2 1 7 7 C 1.37877 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99934 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46665 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47125 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00044 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47020 * 180.02562 * 12 11 10 14 14 C 1.33635 * 122.75319 * 94.72961 * 13 12 11 15 15 S 1.76192 * 107.92524 * 179.97438 * 14 13 12 16 16 C 1.70976 * 90.28427 * 0.27803 * 15 14 13 17 17 N 1.29027 * 110.16712 * 359.83656 * 16 15 14 18 18 H 0.97008 * 119.99783 * 359.97438 * 1 2 3 19 19 H 1.08991 * 109.47439 * 60.00040 * 9 7 2 20 20 H 1.08999 * 109.47043 * 299.99783 * 9 7 2 21 21 H 1.09004 * 109.47331 * 60.00072 * 10 9 7 22 22 H 1.08999 * 109.47285 * 299.99722 * 10 9 7 23 23 H 1.00897 * 110.99470 * 303.95499 * 11 10 9 24 24 H 1.09000 * 109.47401 * 59.99871 * 12 11 10 25 25 H 1.09002 * 109.46966 * 299.99612 * 12 11 10 26 26 H 1.08001 * 126.03202 * 0.03585 * 14 13 12 27 27 H 1.08001 * 124.91761 * 179.84059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4906 -2.6365 -0.0022 12 6 6.0169 -4.0079 -0.0027 13 6 7.5235 -3.9678 -0.0033 14 6 8.2491 -4.0414 1.1165 15 16 9.9506 -3.9594 0.6664 16 6 9.5169 -3.8261 -0.9821 17 7 8.2330 -3.8507 -1.1077 18 1 -0.4850 0.8401 0.0004 19 1 3.8753 -0.6804 0.8887 20 1 3.8745 -0.6800 -0.8911 21 1 3.6578 -3.1505 -0.8907 22 1 3.6586 -3.1501 0.8893 23 1 5.8514 -2.1107 -0.7840 24 1 5.6667 -4.5313 -0.8924 25 1 5.6682 -4.5313 0.8876 26 1 7.8611 -4.1356 2.1199 27 1 10.2164 -3.7345 -1.7999 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379329392.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 15.973759 kcal Electronic energy + Delta-G solvation = -11298.895136 eV Core-core repulsion = 9182.361567 eV Total energy + Delta-G solvation = -2116.533570 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.79792 -37.44729 -35.01494 -32.77066 -30.89009 -27.63725 -25.88512 -24.49775 -22.32783 -20.51862 -19.00426 -18.86382 -17.20861 -16.41248 -16.19610 -15.88870 -15.28271 -14.64785 -14.61529 -14.39246 -14.05862 -13.59388 -12.95218 -12.93825 -12.46000 -11.91268 -11.79296 -11.68889 -11.44372 -10.77915 -10.61177 -10.38145 -9.83363 -9.37868 -8.30794 -6.35429 -0.17203 0.52745 0.80795 1.36184 1.38191 1.51569 1.77991 2.36172 3.04644 3.24155 3.53402 4.05576 4.20679 4.42863 4.47867 4.52126 4.60209 4.83339 4.93878 5.15462 5.25502 5.45869 5.61389 6.04544 6.22195 6.38885 6.72451 6.81053 7.29516 8.85752 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.063102 B = 0.005338 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.621951 B = 5243.696817 C = 5444.365373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.004 4.004 10 C 0.086 3.914 11 N -0.687 5.687 12 C 0.133 3.867 13 C 0.045 3.955 14 C -0.243 4.243 15 S 0.166 5.834 16 C 0.014 3.986 17 N -0.505 5.505 18 H 0.267 0.733 19 H 0.024 0.976 20 H 0.015 0.985 21 H 0.018 0.982 22 H 0.065 0.935 23 H 0.339 0.661 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.191 0.809 27 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.944 -7.620 1.218 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.573 4.573 8 H 0.053 0.947 9 C -0.042 4.042 10 C -0.042 4.042 11 N -0.318 5.318 12 C 0.002 3.998 13 C -0.086 4.086 14 C -0.383 4.383 15 S 0.418 5.582 16 C -0.284 4.284 17 N -0.220 5.220 18 H 0.076 0.924 19 H 0.042 0.958 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.084 0.916 23 H 0.156 0.844 24 H 0.056 0.944 25 H 0.115 0.885 26 H 0.209 0.791 27 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 23.579 -7.444 1.887 24.798 hybrid contribution -1.483 0.371 -1.057 1.858 sum 22.097 -7.073 0.830 23.216 Atomic orbital electron populations 1.70064 1.08242 1.28245 1.52470 1.25992 0.95637 1.03524 0.93973 0.85607 0.79424 0.78138 0.79146 1.19246 1.20755 1.17249 1.21401 0.91807 0.93342 1.50736 0.94736 1.19427 0.93654 0.94382 0.96710 1.21677 0.85556 0.97609 0.99408 1.60603 1.07875 1.13365 1.49927 1.20411 0.87039 0.90477 1.01877 1.20202 0.97401 1.03531 0.87495 1.27150 0.96297 1.10469 1.04368 1.83736 1.05471 1.65851 1.03124 1.28916 0.94630 1.02935 1.01880 1.66125 1.06674 1.16772 1.32432 0.92393 0.95760 0.96703 0.96379 0.91647 0.84383 0.94377 0.88468 0.79135 0.75565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.15 15 2 C 0.01 0.34 5.47 84.65 0.46 0.80 15 3 Si 0.95 45.45 27.47 68.60 1.88 47.34 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 15 7 C -0.53 -31.61 9.66 25.60 0.25 -31.37 15 8 H 0.03 2.22 7.99 -2.91 -0.02 2.20 15 9 C 0.00 -0.19 4.30 29.85 0.13 -0.06 15 10 C 0.09 3.54 5.62 86.30 0.49 4.03 15 11 N -0.69 -23.80 6.49 -517.92 -3.36 -27.16 15 12 C 0.13 3.87 6.12 85.56 0.52 4.39 15 13 C 0.05 1.18 6.25 41.52 0.26 1.44 15 14 C -0.24 -5.10 11.11 66.77 0.74 -4.36 15 15 S 0.17 2.54 23.22 -56.49 -1.31 1.23 15 16 C 0.01 0.25 12.23 130.65 1.60 1.85 15 17 N -0.51 -13.20 10.53 -191.54 -2.02 -15.21 15 18 H 0.27 15.80 8.31 -92.70 -0.77 15.03 15 19 H 0.02 1.18 7.20 -2.39 -0.02 1.17 15 20 H 0.01 0.70 7.57 -2.39 -0.02 0.68 15 21 H 0.02 0.75 8.14 -2.38 -0.02 0.73 15 22 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.34 11.83 8.72 -89.70 -0.78 11.05 15 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 25 H 0.10 2.54 8.10 -2.39 -0.02 2.52 15 26 H 0.19 3.35 8.06 -2.91 -0.02 3.32 15 27 H 0.23 2.34 8.06 -2.91 -0.02 2.31 15 Total: -1.00 -69.15 251.63 0.27 -68.88 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.33 Total: 8.35 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.45 Total: -23.28 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.08 Total: -102.53 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.31 Total: 1.23 kcal Total: -69.15 0.27 -68.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379329392.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.855 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds