Wall clock time and date at job start Sun Mar 29 2020 21:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29981 * 126.23057 * 2 1 4 4 O 1.21278 * 110.43647 * 179.97438 * 3 2 1 5 5 C 1.33939 * 109.77131 * 0.02562 * 4 3 2 6 6 O 1.35061 * 126.63816 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00363 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47165 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46864 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47008 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00034 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99908 * 179.97438 * 10 9 8 13 13 N 1.31524 * 119.99742 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00137 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47032 * 89.99787 * 14 12 10 16 16 H 1.48496 * 109.47143 * 209.99787 * 14 12 10 17 17 H 1.48502 * 109.46972 * 330.00092 * 14 12 10 18 18 N 1.31902 * 106.71940 * 359.74981 * 5 4 3 19 19 H 1.09001 * 109.46953 * 90.02323 * 1 2 3 20 20 H 1.09000 * 109.47318 * 210.01921 * 1 2 3 21 21 H 1.09000 * 109.47161 * 330.02552 * 1 2 3 22 22 H 1.08996 * 109.47300 * 300.00169 * 7 6 5 23 23 H 1.09001 * 109.47050 * 60.00158 * 7 6 5 24 24 H 1.08999 * 109.46733 * 299.99618 * 8 7 6 25 25 H 1.08993 * 109.47161 * 59.99843 * 8 7 6 26 26 H 1.09004 * 109.47155 * 299.99700 * 9 8 7 27 27 H 1.09001 * 109.47352 * 60.00151 * 9 8 7 28 28 H 0.96994 * 119.99497 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0485 0.0000 4 8 3.4423 0.7184 0.0005 5 6 3.5352 -0.6178 0.0003 6 8 4.6722 -1.3467 0.0003 7 6 5.9056 -0.6249 0.0010 8 6 7.0743 -1.6123 0.0002 9 6 8.3948 -0.8395 0.0016 10 6 9.5460 -1.8120 0.0001 11 1 9.3549 -2.8750 -0.0012 12 6 10.8432 -1.3448 0.0005 13 7 11.8479 -2.1936 -0.0003 14 14 11.1737 0.4938 0.0035 15 1 11.2617 0.9785 1.4044 16 1 12.4544 0.7676 -0.6964 17 1 10.0677 1.1967 -0.6950 18 7 2.3013 -1.0839 0.0052 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5134 22 1 5.9599 0.0025 -0.8886 23 1 5.9594 0.0016 0.8913 24 1 7.0202 -2.2400 0.8896 25 1 7.0203 -2.2385 -0.8903 26 1 8.4492 -0.2114 -0.8877 27 1 8.4486 -0.2136 0.8924 28 1 12.7604 -1.8648 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379355649.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:51 Heat of formation + Delta-G solvation = 20.773048 kcal Electronic energy + Delta-G solvation = -13340.499568 eV Core-core repulsion = 10781.421240 eV Total energy + Delta-G solvation = -2559.078328 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.53366 -39.23607 -36.14133 -34.38951 -32.44978 -31.68701 -29.26050 -27.77302 -24.03197 -23.73395 -21.77969 -20.43496 -18.85175 -18.50608 -16.89377 -16.75237 -15.95613 -15.05709 -14.24501 -14.04271 -13.81441 -13.58984 -13.10787 -12.81441 -12.29465 -12.00135 -11.88617 -11.22058 -11.18319 -11.06924 -10.84390 -10.24009 -10.04237 -9.85961 -9.40225 -9.34946 -8.64030 -6.13744 -4.13920 1.17437 1.93356 2.18533 2.93271 3.24097 3.32411 3.33509 3.78922 4.35870 4.44384 5.07563 5.07699 5.16218 5.20050 5.20773 5.33116 5.52176 5.68994 5.84629 6.17997 6.18951 6.56316 6.76144 7.06925 7.17937 7.63961 8.12183 8.41298 8.90114 9.46666 10.99240 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.083469 B = 0.005100 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.373242 B = 5488.343759 C = 5792.665579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.190 3.810 3 N -0.387 5.387 4 O 0.035 5.965 5 C 0.372 3.628 6 O -0.240 6.240 7 C 0.048 3.952 8 C -0.100 4.100 9 C -0.008 4.008 10 C -0.525 4.525 11 H 0.075 0.925 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 N -0.489 5.489 19 H 0.090 0.910 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 5.991 -0.026 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 N -0.111 5.111 4 O -0.018 6.018 5 C 0.117 3.883 6 O -0.143 6.143 7 C -0.026 4.026 8 C -0.138 4.138 9 C -0.046 4.046 10 C -0.563 4.563 11 H 0.093 0.907 12 C -0.134 4.134 13 N -0.537 5.537 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.190 1.190 18 N -0.241 5.241 19 H 0.108 0.892 20 H 0.111 0.889 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.547 6.182 -0.022 19.550 hybrid contribution 0.766 0.957 0.010 1.226 sum -17.781 7.140 -0.012 19.161 Atomic orbital electron populations 1.20142 0.82625 1.04701 1.04375 1.25711 1.00323 0.83194 0.99041 1.74651 0.88385 1.22614 1.25425 1.85446 1.23351 1.24021 1.69004 1.26461 0.89692 0.80150 0.91980 1.86394 1.10986 1.30172 1.86777 1.23737 0.78884 0.96975 1.03020 1.21621 0.91049 0.97523 1.03612 1.19525 0.91666 0.96510 0.96884 1.21011 0.89148 0.94473 1.51664 0.90696 1.25022 0.96150 0.97835 0.94377 1.69906 0.99007 1.34367 1.50418 0.86777 0.77942 0.85954 0.78612 1.20163 1.21209 1.18990 1.72274 0.96455 1.27236 1.28096 0.89191 0.88904 0.89394 0.90581 0.90581 0.90926 0.90896 0.96074 0.96500 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.01 0.38 -0.08 15 2 C 0.19 2.45 8.21 -156.44 -1.28 1.17 15 3 N -0.39 -5.53 12.15 31.08 0.38 -5.15 15 4 O 0.04 0.52 10.85 -5.80 -0.06 0.46 15 5 C 0.37 5.67 9.14 52.40 0.48 6.15 15 6 O -0.24 -3.76 10.18 -40.04 -0.41 -4.17 15 7 C 0.05 0.71 5.71 37.16 0.21 0.93 15 8 C -0.10 -1.83 5.52 -26.73 -0.15 -1.98 15 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 15 10 C -0.53 -14.39 9.66 -34.44 -0.33 -14.72 15 11 H 0.07 2.21 7.99 -52.48 -0.42 1.79 15 12 C 0.07 1.93 5.47 -17.81 -0.10 1.83 15 13 N -0.90 -27.08 13.96 55.43 0.77 -26.31 15 14 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 17 H -0.27 -5.97 6.54 56.52 0.37 -5.60 15 18 N -0.49 -7.39 11.58 -13.75 -0.16 -7.55 15 19 H 0.09 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.09 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 26 H 0.02 0.46 7.20 -51.93 -0.37 0.09 15 27 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 15 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 253.27 15.07 3.82 3.82 Total: -1.00 -30.70 253.27 -4.55 -35.25 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -3.31 Total: -5.57 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.91 Total: -7.01 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.99 Total: -39.01 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -0.47 Total: -3.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.70 -4.55 -35.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379355649.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.021 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds