Wall clock time and date at job start Sun Mar 29 2020 21:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29981 * 126.23057 * 2 1 4 4 O 1.21278 * 110.43647 * 179.97438 * 3 2 1 5 5 C 1.33939 * 109.77131 * 0.02562 * 4 3 2 6 6 O 1.35061 * 126.63816 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00363 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47165 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46864 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47008 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00034 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99908 * 179.97438 * 10 9 8 13 13 N 1.31524 * 119.99742 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00137 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47032 * 89.99787 * 14 12 10 16 16 H 1.48496 * 109.47143 * 209.99787 * 14 12 10 17 17 H 1.48502 * 109.46972 * 330.00092 * 14 12 10 18 18 N 1.31902 * 106.71940 * 359.74981 * 5 4 3 19 19 H 1.09001 * 109.46953 * 90.02323 * 1 2 3 20 20 H 1.09000 * 109.47318 * 210.01921 * 1 2 3 21 21 H 1.09000 * 109.47161 * 330.02552 * 1 2 3 22 22 H 1.08996 * 109.47300 * 300.00169 * 7 6 5 23 23 H 1.09001 * 109.47050 * 60.00158 * 7 6 5 24 24 H 1.08999 * 109.46733 * 299.99618 * 8 7 6 25 25 H 1.08993 * 109.47161 * 59.99843 * 8 7 6 26 26 H 1.09004 * 109.47155 * 299.99700 * 9 8 7 27 27 H 1.09001 * 109.47352 * 60.00151 * 9 8 7 28 28 H 0.96994 * 119.99497 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0485 0.0000 4 8 3.4423 0.7184 0.0005 5 6 3.5352 -0.6178 0.0003 6 8 4.6722 -1.3467 0.0003 7 6 5.9056 -0.6249 0.0010 8 6 7.0743 -1.6123 0.0002 9 6 8.3948 -0.8395 0.0016 10 6 9.5460 -1.8120 0.0001 11 1 9.3549 -2.8750 -0.0012 12 6 10.8432 -1.3448 0.0005 13 7 11.8479 -2.1936 -0.0003 14 14 11.1737 0.4938 0.0035 15 1 11.2617 0.9785 1.4044 16 1 12.4544 0.7676 -0.6964 17 1 10.0677 1.1967 -0.6950 18 7 2.3013 -1.0839 0.0052 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5134 22 1 5.9599 0.0025 -0.8886 23 1 5.9594 0.0016 0.8913 24 1 7.0202 -2.2400 0.8896 25 1 7.0203 -2.2385 -0.8903 26 1 8.4492 -0.2114 -0.8877 27 1 8.4486 -0.2136 0.8924 28 1 12.7604 -1.8648 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379355649.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:51 Heat of formation + Delta-G solvation = -2.082313 kcal Electronic energy + Delta-G solvation = -13341.490651 eV Core-core repulsion = 10781.421240 eV Total energy + Delta-G solvation = -2560.069411 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -46.59359 -40.43900 -37.18055 -36.10392 -34.07871 -33.06076 -30.04937 -29.46543 -25.35139 -25.09511 -22.97183 -22.04860 -19.99873 -19.60000 -18.93549 -17.84722 -17.17212 -16.49492 -16.02440 -15.10728 -14.95884 -14.79005 -14.44822 -13.98987 -13.64820 -13.29372 -13.16859 -12.69320 -12.64245 -12.14785 -12.11272 -11.96766 -11.78354 -11.55662 -11.38732 -10.76798 -10.50120 -8.29297 -6.35126 0.08078 0.77649 1.15499 1.39316 1.41086 1.52231 1.83358 2.36912 2.92770 3.06199 3.45321 3.83147 3.89363 4.25622 4.37107 4.61341 4.65078 4.66827 4.67742 4.83406 4.92488 5.13816 5.35726 5.47269 5.56496 5.65958 6.25707 6.73432 7.05507 7.29397 8.87290 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.083469 B = 0.005100 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.373242 B = 5488.343759 C = 5792.665579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.195 3.805 3 N -0.403 5.403 4 O 0.031 5.969 5 C 0.368 3.632 6 O -0.250 6.250 7 C 0.056 3.944 8 C -0.094 4.094 9 C -0.007 4.007 10 C -0.536 4.536 11 H 0.032 0.968 12 C 0.002 3.998 13 N -0.951 5.951 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.287 1.287 17 H -0.238 1.238 18 N -0.508 5.508 19 H 0.109 0.891 20 H 0.105 0.895 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.259 8.188 -0.046 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.077 4.077 3 N -0.128 5.128 4 O -0.020 6.020 5 C 0.113 3.887 6 O -0.154 6.154 7 C -0.018 4.018 8 C -0.132 4.132 9 C -0.045 4.045 10 C -0.574 4.574 11 H 0.051 0.949 12 C -0.195 4.195 13 N -0.592 5.592 14 Si 0.776 3.224 15 H -0.191 1.191 16 H -0.213 1.213 17 H -0.162 1.162 18 N -0.261 5.261 19 H 0.127 0.873 20 H 0.124 0.876 21 H 0.124 0.876 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.419 8.382 -0.042 22.072 hybrid contribution 1.266 0.153 0.017 1.275 sum -19.153 8.535 -0.025 20.969 Atomic orbital electron populations 1.20449 0.79207 1.06207 1.06042 1.26593 1.02059 0.82054 0.97031 1.74645 0.88378 1.23131 1.26644 1.85436 1.23778 1.23547 1.69247 1.26436 0.89502 0.80481 0.92317 1.86326 1.11355 1.30649 1.87046 1.23541 0.77626 0.95734 1.04851 1.21354 0.91130 0.97729 1.02981 1.19444 0.91364 0.95791 0.97861 1.21415 0.91368 0.93809 1.50844 0.94942 1.26072 0.95841 1.03596 0.94014 1.70077 0.99624 1.37121 1.52360 0.85621 0.78377 0.79140 0.79296 1.19103 1.21343 1.16150 1.72297 0.96760 1.28471 1.28542 0.87271 0.87632 0.87615 0.88829 0.88765 0.91687 0.91687 0.94893 0.95009 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.24 0.75 -0.01 15 2 C 0.20 4.60 8.21 138.49 1.14 5.74 15 3 N -0.40 -10.70 12.15 -59.67 -0.72 -11.42 15 4 O 0.03 0.86 10.85 94.27 1.02 1.88 15 5 C 0.37 10.64 9.14 130.37 1.19 11.83 15 6 O -0.25 -7.48 10.18 -61.21 -0.62 -8.10 15 7 C 0.06 1.56 5.71 71.98 0.41 1.97 15 8 C -0.09 -3.35 5.52 30.59 0.17 -3.18 15 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 15 10 C -0.54 -29.85 9.66 25.60 0.25 -29.60 15 11 H 0.03 2.01 7.99 -2.91 -0.02 1.98 15 12 C 0.00 0.09 5.47 84.65 0.46 0.55 15 13 N -0.95 -58.88 13.96 21.45 0.30 -58.58 15 14 Si 0.95 42.27 27.47 68.60 1.88 44.15 15 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 16 H -0.29 -12.72 7.11 99.48 0.71 -12.01 15 17 H -0.24 -9.47 6.54 99.48 0.65 -8.82 15 18 N -0.51 -14.56 11.58 -427.90 -4.96 -19.51 15 19 H 0.11 0.98 8.14 -2.39 -0.02 0.96 15 20 H 0.11 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.11 0.95 8.14 -2.39 -0.02 0.94 15 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.09 2.29 8.14 -2.39 -0.02 2.28 15 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.03 1.34 7.20 -2.38 -0.02 1.32 15 27 H 0.03 1.27 7.57 -2.39 -0.02 1.25 15 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -67.06 253.27 2.49 -64.57 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.10 Total: -0.10 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.49 Total: -12.88 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -5.38 Total: -89.52 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: 0.40 Total: -6.22 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Total: -67.06 2.49 -64.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379355649.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.486 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds