Wall clock time and date at job start Sun Mar 29 2020 21:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.05377 * 2 1 4 4 C 1.54269 * 110.03138 * 238.58587 * 2 1 3 5 5 C 1.54890 * 104.19449 * 217.10522 * 4 2 1 6 6 C 1.54886 * 102.74943 * 37.94356 * 5 4 2 7 7 H 1.09001 * 110.59957 * 80.78768 * 6 5 4 8 8 C 1.52998 * 110.48540 * 203.37709 * 6 5 4 9 9 C 1.53871 * 110.03343 * 121.41867 * 2 1 3 10 10 N 1.46899 * 110.03439 * 359.97438 * 9 2 1 11 11 C 1.46894 * 111.00236 * 194.01899 * 10 9 2 12 12 C 1.53003 * 109.47027 * 174.46585 * 11 10 9 13 13 C 1.50708 * 109.46798 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00220 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99745 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99957 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47083 * 59.99947 * 17 15 13 19 19 H 1.48498 * 109.46888 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47350 * 299.99943 * 17 15 13 21 21 H 1.09004 * 109.46900 * 305.02572 * 1 2 3 22 22 H 1.08997 * 109.47234 * 65.02181 * 1 2 3 23 23 H 1.08997 * 109.47363 * 185.02978 * 1 2 3 24 24 H 1.09005 * 110.48289 * 98.42726 * 4 2 1 25 25 H 1.08994 * 110.59844 * 335.84149 * 4 2 1 26 26 H 1.08997 * 110.75298 * 279.62359 * 5 4 2 27 27 H 1.09004 * 110.91101 * 156.33296 * 5 4 2 28 28 H 1.09001 * 109.47007 * 174.77124 * 8 6 5 29 29 H 1.08997 * 109.47547 * 294.77442 * 8 6 5 30 30 H 1.09007 * 109.46930 * 54.77783 * 8 6 5 31 31 H 1.08999 * 110.07722 * 238.59047 * 9 2 1 32 32 H 1.00898 * 110.99655 * 317.97734 * 10 9 2 33 33 H 1.09005 * 109.47341 * 294.46526 * 11 10 9 34 34 H 1.08998 * 109.47281 * 54.46798 * 11 10 9 35 35 H 1.08996 * 109.47248 * 299.99581 * 12 11 10 36 36 H 1.09003 * 109.47070 * 60.00437 * 12 11 10 37 37 H 0.96998 * 119.99746 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3136 -1.5007 -0.7192 6 6 2.8874 -1.9407 0.7034 7 1 2.2777 -2.8431 0.6591 8 6 4.1174 -2.1697 1.5840 9 6 2.0571 -0.7536 1.2337 10 7 0.9329 -1.2460 2.0409 11 6 1.3866 -1.6699 3.3722 12 6 0.1752 -2.0449 4.2283 13 6 0.6408 -2.4804 5.5939 14 1 1.6951 -2.4892 5.8276 15 6 -0.2794 -2.8675 6.5449 16 7 -1.5634 -2.8572 6.2602 17 14 0.2975 -3.4066 8.2378 18 1 1.0371 -2.2941 8.8862 19 1 -0.8782 -3.7706 9.0687 20 1 1.1922 -4.5842 8.1041 21 1 -0.3633 0.5899 0.8416 22 1 -0.3633 0.4339 -0.9315 23 1 -0.3634 -1.0237 0.0901 24 1 2.3297 -0.0535 -2.0255 25 1 1.3152 -1.4658 -1.5989 26 1 4.1709 -0.8290 -0.6753 27 1 3.5356 -2.3677 -1.3415 28 1 3.7989 -2.3875 2.6034 29 1 4.6913 -3.0107 1.1951 30 1 4.7383 -1.2737 1.5810 31 1 2.6865 -0.0959 1.8331 32 1 0.2061 -0.5497 2.1113 33 1 2.0436 -2.5341 3.2741 34 1 1.9291 -0.8532 3.8483 35 1 -0.4818 -1.1807 4.3266 36 1 -0.3673 -2.8617 3.7523 37 1 -2.2107 -3.1291 6.9294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379378103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:12 Heat of formation + Delta-G solvation = -28.572328 kcal Electronic energy + Delta-G solvation = -14438.272516 eV Core-core repulsion = 12214.146512 eV Total energy + Delta-G solvation = -2224.126004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12075 -34.67482 -32.69289 -32.42018 -29.58463 -27.97052 -25.51706 -23.97046 -23.18943 -20.62042 -20.09665 -18.63861 -16.32626 -15.56065 -15.26758 -14.75251 -14.37589 -13.84733 -13.41056 -12.96155 -12.65541 -12.50447 -12.23791 -11.93016 -11.56395 -11.30000 -10.96988 -10.90375 -10.67464 -10.60158 -10.51738 -10.40137 -10.32727 -10.09295 -9.86245 -9.24714 -9.12359 -8.32632 -7.69436 -5.97390 -3.99778 3.34845 3.39033 3.41557 4.45972 4.71241 4.72736 4.77458 5.15444 5.37918 5.38423 5.45962 5.63366 5.67083 5.69624 5.71392 5.80373 5.95927 6.06898 6.08517 6.14209 6.22009 6.29740 6.34740 6.35995 6.53054 6.57208 6.65215 6.70530 7.07166 7.58945 7.77947 7.89787 8.05835 8.13380 8.47433 9.07323 9.63780 11.14056 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.006512 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.015710 B = 4298.395172 C = 4751.247399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.086 4.086 7 H 0.085 0.915 8 C -0.149 4.149 9 C 0.088 3.912 10 N -0.685 5.685 11 C 0.063 3.937 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.338 0.662 33 H 0.060 0.940 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.024 0.976 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 4.549 -13.039 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.082 0.918 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.105 4.105 7 H 0.104 0.896 8 C -0.206 4.206 9 C -0.022 4.022 10 N -0.319 5.319 11 C -0.065 4.065 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.043 0.957 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.402 3.886 -13.208 15.631 hybrid contribution 0.446 0.596 1.495 1.670 sum 7.849 4.482 -11.713 14.795 Atomic orbital electron populations 1.21777 0.94631 1.03307 1.00362 1.21831 0.96466 0.98326 0.94779 0.91837 1.22363 0.97424 0.98770 0.96680 1.22530 0.97360 0.99507 0.96404 1.21993 0.95851 0.99047 0.93596 0.89626 1.21910 0.97310 1.00739 1.00639 1.22186 0.92290 0.94234 0.93528 1.60913 1.10651 1.43897 1.16396 1.22229 0.99737 0.97923 0.86601 1.19089 0.92138 0.96933 0.93189 1.21147 0.92978 1.44385 0.97448 0.92866 1.25002 0.94897 0.95740 0.98715 1.69965 1.00581 1.48194 1.34596 0.86655 0.78073 0.79110 0.84137 1.20319 1.21267 1.20229 0.92934 0.93542 0.90569 0.92383 0.91369 0.91994 0.91917 0.91844 0.93106 0.93361 0.94708 0.84169 0.92123 0.96986 0.97006 0.95717 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.79 37.16 0.29 -1.54 16 2 C -0.10 -1.21 3.50 -89.50 -0.31 -1.53 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.30 6.36 -25.07 -0.16 -1.46 16 5 C -0.12 -1.38 6.33 -24.74 -0.16 -1.54 16 6 C -0.09 -1.21 2.77 -88.96 -0.25 -1.46 16 7 H 0.09 1.36 8.05 -51.93 -0.42 0.95 16 8 C -0.15 -2.03 9.01 37.16 0.33 -1.70 16 9 C 0.09 1.34 2.80 -66.59 -0.19 1.15 16 10 N -0.69 -12.45 5.26 -105.54 -0.56 -13.01 16 11 C 0.06 1.36 5.09 -3.83 -0.02 1.34 16 12 C 0.02 0.63 5.18 -27.88 -0.14 0.49 16 13 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.05 0.68 7.03 -51.93 -0.37 0.31 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 1.09 7.50 -51.93 -0.39 0.70 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 26 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.99 6.08 -51.93 -0.32 0.67 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.61 8.12 -51.92 -0.42 0.18 16 31 H 0.04 0.56 7.61 -51.93 -0.40 0.16 16 32 H 0.34 6.04 6.14 -39.29 -0.24 5.80 16 33 H 0.06 1.32 6.18 -51.93 -0.32 1.00 16 34 H 0.01 0.26 7.98 -51.93 -0.41 -0.15 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -29.59 286.43 -8.14 -37.73 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.61 Total: 0.56 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.01 Total: -19.99 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.18 Total: -39.53 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.59 -8.14 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.160 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds