Wall clock time and date at job start Sun Mar 29 2020 21:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.05377 * 2 1 4 4 C 1.54269 * 110.03138 * 238.58587 * 2 1 3 5 5 C 1.54890 * 104.19449 * 217.10522 * 4 2 1 6 6 C 1.54886 * 102.74943 * 37.94356 * 5 4 2 7 7 H 1.09001 * 110.59957 * 80.78768 * 6 5 4 8 8 C 1.52998 * 110.48540 * 203.37709 * 6 5 4 9 9 C 1.53871 * 110.03343 * 121.41867 * 2 1 3 10 10 N 1.46899 * 110.03439 * 359.97438 * 9 2 1 11 11 C 1.46894 * 111.00236 * 194.01899 * 10 9 2 12 12 C 1.53003 * 109.47027 * 174.46585 * 11 10 9 13 13 C 1.50708 * 109.46798 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00220 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99745 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99957 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47083 * 59.99947 * 17 15 13 19 19 H 1.48498 * 109.46888 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47350 * 299.99943 * 17 15 13 21 21 H 1.09004 * 109.46900 * 305.02572 * 1 2 3 22 22 H 1.08997 * 109.47234 * 65.02181 * 1 2 3 23 23 H 1.08997 * 109.47363 * 185.02978 * 1 2 3 24 24 H 1.09005 * 110.48289 * 98.42726 * 4 2 1 25 25 H 1.08994 * 110.59844 * 335.84149 * 4 2 1 26 26 H 1.08997 * 110.75298 * 279.62359 * 5 4 2 27 27 H 1.09004 * 110.91101 * 156.33296 * 5 4 2 28 28 H 1.09001 * 109.47007 * 174.77124 * 8 6 5 29 29 H 1.08997 * 109.47547 * 294.77442 * 8 6 5 30 30 H 1.09007 * 109.46930 * 54.77783 * 8 6 5 31 31 H 1.08999 * 110.07722 * 238.59047 * 9 2 1 32 32 H 1.00898 * 110.99655 * 317.97734 * 10 9 2 33 33 H 1.09005 * 109.47341 * 294.46526 * 11 10 9 34 34 H 1.08998 * 109.47281 * 54.46798 * 11 10 9 35 35 H 1.08996 * 109.47248 * 299.99581 * 12 11 10 36 36 H 1.09003 * 109.47070 * 60.00437 * 12 11 10 37 37 H 0.96998 * 119.99746 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3136 -1.5007 -0.7192 6 6 2.8874 -1.9407 0.7034 7 1 2.2777 -2.8431 0.6591 8 6 4.1174 -2.1697 1.5840 9 6 2.0571 -0.7536 1.2337 10 7 0.9329 -1.2460 2.0409 11 6 1.3866 -1.6699 3.3722 12 6 0.1752 -2.0449 4.2283 13 6 0.6408 -2.4804 5.5939 14 1 1.6951 -2.4892 5.8276 15 6 -0.2794 -2.8675 6.5449 16 7 -1.5634 -2.8572 6.2602 17 14 0.2975 -3.4066 8.2378 18 1 1.0371 -2.2941 8.8862 19 1 -0.8782 -3.7706 9.0687 20 1 1.1922 -4.5842 8.1041 21 1 -0.3633 0.5899 0.8416 22 1 -0.3633 0.4339 -0.9315 23 1 -0.3634 -1.0237 0.0901 24 1 2.3297 -0.0535 -2.0255 25 1 1.3152 -1.4658 -1.5989 26 1 4.1709 -0.8290 -0.6753 27 1 3.5356 -2.3677 -1.3415 28 1 3.7989 -2.3875 2.6034 29 1 4.6913 -3.0107 1.1951 30 1 4.7383 -1.2737 1.5810 31 1 2.6865 -0.0959 1.8331 32 1 0.2061 -0.5497 2.1113 33 1 2.0436 -2.5341 3.2741 34 1 1.9291 -0.8532 3.8483 35 1 -0.4818 -1.1807 4.3266 36 1 -0.3673 -2.8617 3.7523 37 1 -2.2107 -3.1291 6.9294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379378103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:12 Heat of formation + Delta-G solvation = -45.955950 kcal Electronic energy + Delta-G solvation = -14439.026326 eV Core-core repulsion = 12214.146512 eV Total energy + Delta-G solvation = -2224.879814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.28046 -36.39615 -34.60907 -33.57407 -31.30377 -29.24242 -27.07722 -25.38414 -24.58217 -22.42664 -21.22553 -19.83346 -18.47456 -16.82677 -16.75871 -16.29968 -15.99400 -15.11426 -14.80610 -14.36819 -14.19791 -13.79397 -13.57792 -13.43646 -13.11777 -12.79388 -12.60531 -12.53799 -12.16688 -12.08462 -11.63929 -11.60651 -11.42145 -11.37738 -11.35071 -11.19185 -11.07512 -10.57170 -9.21099 -8.21443 -6.33296 1.38899 1.42466 1.50492 2.39607 3.11586 3.39907 3.67637 3.70875 4.06273 4.31753 4.40863 4.48653 4.52466 4.60088 4.62790 4.70278 4.75407 4.81740 4.94334 5.02533 5.05388 5.06702 5.15757 5.23732 5.32737 5.38424 5.39506 5.45143 5.54697 5.62783 5.68371 5.79398 6.15831 6.35853 6.61155 6.83549 7.35944 8.90560 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.006512 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.015710 B = 4298.395172 C = 4751.247399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.089 4.089 7 H 0.062 0.938 8 C -0.146 4.146 9 C 0.083 3.917 10 N -0.687 5.687 11 C 0.085 3.915 12 C 0.031 3.969 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.338 0.662 33 H 0.058 0.942 34 H 0.010 0.990 35 H -0.011 1.011 36 H -0.006 1.006 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.090 4.987 -13.678 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.108 4.108 7 H 0.081 0.919 8 C -0.203 4.203 9 C -0.027 4.027 10 N -0.321 5.321 11 C -0.044 4.044 12 C -0.006 4.006 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.192 1.192 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.007 0.993 36 H 0.012 0.988 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.940 4.330 -13.866 17.057 hybrid contribution -0.061 0.472 1.653 1.720 sum 8.879 4.802 -12.214 15.845 Atomic orbital electron populations 1.21731 0.94868 1.02050 1.01199 1.21855 0.96251 0.98916 0.94145 0.90392 1.22359 0.97093 0.98956 0.96409 1.22499 0.97855 1.00273 0.94319 1.21996 0.95541 0.97595 0.95687 0.91921 1.21880 0.97440 1.01966 0.99057 1.22364 0.91315 0.95024 0.94026 1.60885 1.11944 1.44608 1.14620 1.21825 0.97172 0.97780 0.87644 1.18940 0.93365 0.94770 0.93524 1.21573 0.93442 1.44817 0.98637 0.92346 1.25985 0.94894 0.95489 1.03321 1.70103 1.01927 1.48874 1.36229 0.85470 0.77852 0.79074 0.78463 1.19141 1.20615 1.19157 0.93661 0.91390 0.92590 0.90004 0.91779 0.90608 0.90674 0.94427 0.91639 0.92072 0.95268 0.84145 0.92332 0.97219 0.99265 0.98770 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 7.79 71.98 0.56 -2.89 16 2 C -0.09 -2.20 3.50 -10.07 -0.04 -2.23 16 3 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 4 C -0.11 -2.19 6.36 31.67 0.20 -1.99 16 5 C -0.11 -2.26 6.33 31.88 0.20 -2.06 16 6 C -0.09 -2.43 2.77 -9.72 -0.03 -2.45 16 7 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 8 C -0.15 -3.83 9.01 71.98 0.65 -3.19 16 9 C 0.08 2.45 2.80 45.64 0.13 2.58 16 10 N -0.69 -25.51 5.26 -487.84 -2.57 -28.08 16 11 C 0.08 3.75 5.09 86.31 0.44 4.19 16 12 C 0.03 1.74 5.18 29.85 0.15 1.89 16 13 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H 0.04 1.15 7.03 -2.38 -0.02 1.14 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.59 7.50 -2.39 -0.02 1.58 16 24 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.06 1.33 7.86 -2.39 -0.02 1.31 16 26 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.04 1.16 6.08 -2.39 -0.01 1.15 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.43 8.12 -2.38 -0.02 1.41 16 31 H 0.03 0.91 7.61 -2.39 -0.02 0.89 16 32 H 0.34 12.43 6.14 -89.70 -0.55 11.88 16 33 H 0.06 2.61 6.18 -2.38 -0.01 2.60 16 34 H 0.01 0.43 7.98 -2.39 -0.02 0.41 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -64.12 286.43 3.17 -60.95 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.46 Total: 15.20 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 2.97 Total: -37.51 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.28 Total: -85.68 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.12 3.17 -60.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.991 kcal (2) G-P(sol) polarization free energy of solvation -64.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds