Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.01561 * 2 1 4 4 C 1.53869 * 110.03587 * 238.59959 * 2 1 3 5 5 C 1.54270 * 106.63967 * 240.69205 * 4 2 1 6 6 C 1.54961 * 104.16191 * 336.44607 * 5 4 2 7 7 H 1.09001 * 110.71970 * 279.57802 * 6 5 4 8 8 C 1.52994 * 110.92578 * 156.29427 * 6 5 4 9 9 C 1.54268 * 110.02861 * 121.42987 * 2 1 3 10 10 H 1.09001 * 110.48482 * 24.22197 * 9 2 1 11 11 N 1.46905 * 110.49065 * 261.57755 * 9 2 1 12 12 C 1.46899 * 111.00043 * 155.00118 * 11 9 2 13 13 C 1.53001 * 109.46832 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46797 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00486 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99576 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00384 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47278 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47145 * 120.00141 * 18 16 14 21 21 H 1.48502 * 109.47169 * 240.00198 * 18 16 14 22 22 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47501 * 299.94662 * 1 2 3 24 24 H 1.09008 * 109.47027 * 59.94751 * 1 2 3 25 25 H 1.09002 * 110.03268 * 0.02562 * 4 2 1 26 26 H 1.08995 * 110.03391 * 121.38598 * 4 2 1 27 27 H 1.08997 * 110.48585 * 95.09409 * 5 4 2 28 28 H 1.09002 * 110.48442 * 217.73292 * 5 4 2 29 29 H 1.09003 * 109.47034 * 306.54141 * 8 6 5 30 30 H 1.09003 * 109.47039 * 66.53749 * 8 6 5 31 31 H 1.08996 * 109.47722 * 186.54070 * 8 6 5 32 32 H 1.00902 * 110.99516 * 31.04615 * 11 9 2 33 33 H 1.08997 * 109.47246 * 299.99830 * 12 11 9 34 34 H 1.09004 * 109.47237 * 60.00022 * 12 11 9 35 35 H 1.08997 * 109.47191 * 300.00017 * 13 12 11 36 36 H 1.09004 * 109.47066 * 60.00071 * 13 12 11 37 37 H 0.96993 * 120.00199 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7532 -1.2339 5 6 2.8882 -1.9404 -0.7050 6 6 3.3136 -1.5010 0.7189 7 1 4.1709 -0.8292 0.6751 8 6 3.6234 -2.7157 1.5959 9 6 2.0583 -0.7558 1.2367 10 1 1.3141 -1.4664 1.5962 11 7 2.4238 0.1898 2.2999 12 6 2.3550 -0.4503 3.6203 13 6 2.7421 0.5632 4.6991 14 6 2.6710 -0.0934 6.0537 15 1 2.3793 -1.1299 6.1369 16 6 2.9793 0.6291 7.1869 17 7 3.3350 1.8911 7.0858 18 14 2.8918 -0.1849 8.8660 19 1 2.4698 -1.6000 8.7088 20 1 4.2290 -0.1363 9.5100 21 1 1.9075 0.5343 9.7141 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5130 0.8904 24 1 -0.3633 0.5147 -0.8896 25 1 1.2230 -1.1183 -1.8330 26 1 2.6861 -0.0946 -1.8328 27 1 2.2784 -2.8426 -0.6593 28 1 3.7644 -2.1024 -1.3328 29 1 2.7759 -3.4010 1.5798 30 1 4.5087 -3.2237 1.2134 31 1 3.8062 -2.3880 2.6192 32 1 1.8422 1.0136 2.2667 33 1 1.3397 -0.8034 3.8005 34 1 3.0441 -1.2944 3.6512 35 1 3.7576 0.9158 4.5188 36 1 2.0534 1.4075 4.6683 37 1 3.5515 2.3994 7.8830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379378107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = -35.669973 kcal Electronic energy + Delta-G solvation = -14336.600676 eV Core-core repulsion = 12112.166895 eV Total energy + Delta-G solvation = -2224.433781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.00410 -34.76232 -32.62077 -32.43389 -29.55262 -28.32441 -25.49035 -23.79913 -23.23151 -20.65923 -19.65314 -19.33210 -16.43307 -15.66585 -14.88016 -14.44110 -14.29901 -13.98902 -13.59766 -13.11176 -12.58416 -12.56709 -12.28676 -12.10073 -11.80594 -11.37555 -11.14392 -10.94289 -10.71409 -10.59818 -10.52870 -10.41677 -10.27591 -10.06085 -9.83032 -9.24515 -9.08891 -8.32969 -7.70401 -5.97426 -3.99718 3.32501 3.39777 3.43933 4.45472 4.65360 4.70421 4.75204 5.11464 5.32196 5.38583 5.42393 5.53140 5.56714 5.67093 5.73268 5.81744 5.88418 5.97479 6.04721 6.10180 6.17977 6.20848 6.29766 6.33618 6.41109 6.52064 6.68074 6.71316 7.09426 7.59651 7.78795 7.88871 8.04723 8.13808 8.47524 9.08064 9.63993 11.14115 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047831 B = 0.006170 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.255712 B = 4536.840785 C = 4821.994875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.084 4.084 7 H 0.083 0.917 8 C -0.148 4.148 9 C 0.089 3.911 10 H 0.045 0.955 11 N -0.683 5.683 12 C 0.062 3.938 13 C 0.024 3.976 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.334 0.666 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -5.857 -14.891 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.103 4.103 7 H 0.101 0.899 8 C -0.205 4.205 9 C -0.021 4.021 10 H 0.063 0.937 11 N -0.314 5.314 12 C -0.066 4.066 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.371 -5.815 -14.847 16.121 hybrid contribution -1.022 -0.400 1.154 1.592 sum -3.393 -6.215 -13.693 15.416 Atomic orbital electron populations 1.21902 0.95385 1.01501 1.01479 1.21934 0.95154 1.00205 0.94810 0.90268 1.22129 0.99152 0.97119 0.96977 1.22423 0.99158 0.97674 0.96614 1.22106 0.98410 0.96601 0.93233 0.89892 1.21885 1.00494 0.97191 1.00970 1.22484 0.94913 0.93717 0.90996 0.93706 1.60675 1.58870 1.08034 1.03834 1.22305 0.97888 0.98883 0.87482 1.19077 0.97412 0.93582 0.91229 1.21226 1.45723 0.97380 0.91525 0.92772 1.25004 0.95334 0.94857 0.99191 1.69981 1.46446 1.07949 1.28932 0.86549 0.77645 0.79564 0.84314 1.19782 1.20978 1.21046 0.92884 0.92735 0.92866 0.92157 0.92043 0.92041 0.92019 0.93434 0.93272 0.91316 0.84790 0.96971 0.91805 0.95695 0.96943 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.84 37.16 0.33 -1.32 16 2 C -0.10 -1.28 2.97 -89.50 -0.27 -1.55 16 3 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 4 C -0.12 -1.27 6.45 -25.61 -0.17 -1.43 16 5 C -0.12 -1.38 6.29 -25.03 -0.16 -1.53 16 6 C -0.08 -1.18 3.15 -88.59 -0.28 -1.46 16 7 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 8 C -0.15 -2.09 9.13 37.15 0.34 -1.75 16 9 C 0.09 1.34 2.22 -66.05 -0.15 1.20 16 10 H 0.05 0.72 7.44 -51.93 -0.39 0.33 16 11 N -0.68 -12.48 6.33 -104.97 -0.66 -13.14 16 12 C 0.06 1.34 5.43 -3.82 -0.02 1.32 16 13 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.67 8.02 -51.93 -0.42 0.25 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.12 5.57 -51.93 -0.29 0.83 16 32 H 0.33 5.95 8.33 -39.29 -0.33 5.62 16 33 H 0.01 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.06 1.38 5.42 -51.93 -0.28 1.09 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 290.64 15.07 4.38 4.38 Total: -1.00 -29.74 290.64 -8.19 -37.93 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.70 Total: 0.24 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -0.92 Total: -19.75 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.07 Total: -39.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.74 -8.19 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.263 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds