Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.01561 * 2 1 4 4 C 1.53869 * 110.03587 * 238.59959 * 2 1 3 5 5 C 1.54270 * 106.63967 * 240.69205 * 4 2 1 6 6 C 1.54961 * 104.16191 * 336.44607 * 5 4 2 7 7 H 1.09001 * 110.71970 * 279.57802 * 6 5 4 8 8 C 1.52994 * 110.92578 * 156.29427 * 6 5 4 9 9 C 1.54268 * 110.02861 * 121.42987 * 2 1 3 10 10 H 1.09001 * 110.48482 * 24.22197 * 9 2 1 11 11 N 1.46905 * 110.49065 * 261.57755 * 9 2 1 12 12 C 1.46899 * 111.00043 * 155.00118 * 11 9 2 13 13 C 1.53001 * 109.46832 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46797 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00486 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99576 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00384 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47278 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47145 * 120.00141 * 18 16 14 21 21 H 1.48502 * 109.47169 * 240.00198 * 18 16 14 22 22 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47501 * 299.94662 * 1 2 3 24 24 H 1.09008 * 109.47027 * 59.94751 * 1 2 3 25 25 H 1.09002 * 110.03268 * 0.02562 * 4 2 1 26 26 H 1.08995 * 110.03391 * 121.38598 * 4 2 1 27 27 H 1.08997 * 110.48585 * 95.09409 * 5 4 2 28 28 H 1.09002 * 110.48442 * 217.73292 * 5 4 2 29 29 H 1.09003 * 109.47034 * 306.54141 * 8 6 5 30 30 H 1.09003 * 109.47039 * 66.53749 * 8 6 5 31 31 H 1.08996 * 109.47722 * 186.54070 * 8 6 5 32 32 H 1.00902 * 110.99516 * 31.04615 * 11 9 2 33 33 H 1.08997 * 109.47246 * 299.99830 * 12 11 9 34 34 H 1.09004 * 109.47237 * 60.00022 * 12 11 9 35 35 H 1.08997 * 109.47191 * 300.00017 * 13 12 11 36 36 H 1.09004 * 109.47066 * 60.00071 * 13 12 11 37 37 H 0.96993 * 120.00199 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7532 -1.2339 5 6 2.8882 -1.9404 -0.7050 6 6 3.3136 -1.5010 0.7189 7 1 4.1709 -0.8292 0.6751 8 6 3.6234 -2.7157 1.5959 9 6 2.0583 -0.7558 1.2367 10 1 1.3141 -1.4664 1.5962 11 7 2.4238 0.1898 2.2999 12 6 2.3550 -0.4503 3.6203 13 6 2.7421 0.5632 4.6991 14 6 2.6710 -0.0934 6.0537 15 1 2.3793 -1.1299 6.1369 16 6 2.9793 0.6291 7.1869 17 7 3.3350 1.8911 7.0858 18 14 2.8918 -0.1849 8.8660 19 1 2.4698 -1.6000 8.7088 20 1 4.2290 -0.1363 9.5100 21 1 1.9075 0.5343 9.7141 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5130 0.8904 24 1 -0.3633 0.5147 -0.8896 25 1 1.2230 -1.1183 -1.8330 26 1 2.6861 -0.0946 -1.8328 27 1 2.2784 -2.8426 -0.6593 28 1 3.7644 -2.1024 -1.3328 29 1 2.7759 -3.4010 1.5798 30 1 4.5087 -3.2237 1.2134 31 1 3.8062 -2.3880 2.6192 32 1 1.8422 1.0136 2.2667 33 1 1.3397 -0.8034 3.8005 34 1 3.0441 -1.2944 3.6512 35 1 3.7576 0.9158 4.5188 36 1 2.0534 1.4075 4.6683 37 1 3.5515 2.3994 7.8830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379378107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = -53.762606 kcal Electronic energy + Delta-G solvation = -14337.385232 eV Core-core repulsion = 12112.166895 eV Total energy + Delta-G solvation = -2225.218336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13847 -36.47097 -34.63339 -33.46942 -31.30242 -29.49846 -27.13611 -24.97697 -24.74773 -22.48777 -20.76464 -20.48037 -18.55081 -17.05224 -16.51223 -16.19330 -15.54718 -15.00998 -14.96850 -14.47240 -14.28664 -13.94578 -13.61621 -13.25736 -13.17298 -12.84604 -12.80878 -12.72344 -12.25042 -12.08026 -11.75480 -11.55677 -11.43865 -11.38107 -11.22514 -11.13493 -11.05693 -10.57825 -9.21756 -8.21510 -6.33222 1.39175 1.39908 1.53283 2.39622 3.11779 3.36154 3.64810 3.72995 4.03266 4.32366 4.42248 4.47787 4.50062 4.51874 4.60816 4.62748 4.77569 4.81041 4.92520 4.99149 5.05109 5.07598 5.15165 5.25014 5.27845 5.33347 5.38445 5.47064 5.51873 5.59288 5.69291 5.81184 6.16482 6.36120 6.58845 6.84305 7.36202 8.91023 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047831 B = 0.006170 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.255712 B = 4536.840785 C = 4821.994875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.088 4.088 7 H 0.066 0.934 8 C -0.146 4.146 9 C 0.085 3.915 10 H 0.039 0.961 11 N -0.688 5.688 12 C 0.082 3.918 13 C 0.032 3.968 14 C -0.544 4.544 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.335 0.665 33 H 0.011 0.989 34 H 0.064 0.936 35 H -0.007 1.007 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -7.274 -15.769 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.107 4.107 7 H 0.084 0.916 8 C -0.203 4.203 9 C -0.025 4.025 10 H 0.057 0.943 11 N -0.319 5.319 12 C -0.046 4.046 13 C -0.005 4.005 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.153 0.847 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.012 0.988 36 H 0.007 0.993 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.931 -7.241 -15.748 17.579 hybrid contribution -0.830 0.077 1.393 1.623 sum -3.761 -7.163 -14.355 16.478 Atomic orbital electron populations 1.21883 0.94346 1.01955 1.01783 1.21914 0.96024 0.99614 0.94317 0.91101 1.22123 0.99803 0.96798 0.96181 1.22384 0.99961 0.98141 0.94571 1.22118 0.97233 0.96159 0.95205 0.91559 1.21852 1.01667 0.97511 0.99291 1.22624 0.95617 0.93353 0.90866 0.94263 1.60622 1.59425 1.08732 1.03122 1.21920 0.97512 0.97340 0.87857 1.18926 0.94923 0.93964 0.92732 1.21631 1.46027 0.97803 0.92766 0.92313 1.25988 0.94572 0.95418 1.03764 1.70113 1.47102 1.09580 1.30435 0.85362 0.77964 0.78882 0.78603 1.18603 1.20237 1.20196 0.92328 0.94052 0.90986 0.90304 0.91250 0.91087 0.90559 0.92491 0.91671 0.94224 0.84738 0.97097 0.91743 0.98841 0.99270 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.84 71.98 0.64 -2.33 16 2 C -0.10 -2.35 2.97 -10.07 -0.03 -2.38 16 3 H 0.07 1.80 7.93 -2.39 -0.02 1.78 16 4 C -0.11 -2.10 6.45 31.32 0.20 -1.90 16 5 C -0.11 -2.25 6.29 31.70 0.20 -2.05 16 6 C -0.09 -2.37 3.15 -9.48 -0.03 -2.40 16 7 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.15 -3.98 9.13 71.98 0.66 -3.32 16 9 C 0.09 2.51 2.22 45.99 0.10 2.61 16 10 H 0.04 1.22 7.44 -2.39 -0.02 1.20 16 11 N -0.69 -25.65 6.33 -486.01 -3.08 -28.73 16 12 C 0.08 3.64 5.43 86.30 0.47 4.11 16 13 C 0.03 1.77 5.23 29.85 0.16 1.93 16 14 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 18 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.08 1.24 7.67 -2.39 -0.02 1.22 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.31 8.02 -2.39 -0.02 1.29 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.04 1.30 5.57 -2.39 -0.01 1.28 16 32 H 0.33 12.26 8.33 -89.69 -0.75 11.51 16 33 H 0.01 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.06 2.85 5.42 -2.38 -0.01 2.83 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -64.37 290.64 2.56 -61.81 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.27 Total: 14.56 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 3.06 Total: -36.96 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.79 Total: -86.46 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.37 2.56 -61.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.048 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds