Wall clock time and date at job start Sun Mar 29 2020 21:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.43165 * 2 1 4 4 C 1.54893 * 110.59970 * 122.62094 * 2 1 3 5 5 C 1.54888 * 102.74780 * 156.68000 * 4 2 1 6 6 C 1.54266 * 104.19371 * 322.05602 * 5 4 2 7 7 H 1.09004 * 110.03309 * 264.32535 * 6 5 4 8 8 C 1.52998 * 110.07332 * 142.91957 * 6 5 4 9 9 C 1.53876 * 106.60142 * 23.61006 * 6 5 4 10 10 N 1.46905 * 110.03089 * 119.28069 * 9 6 5 11 11 C 1.46901 * 110.99832 * 154.88990 * 10 9 6 12 12 C 1.53000 * 109.46777 * 185.75141 * 11 10 9 13 13 C 1.50707 * 109.46725 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99804 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00007 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00129 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46947 * 90.00308 * 17 15 13 19 19 H 1.48500 * 109.46928 * 209.99847 * 17 15 13 20 20 H 1.48492 * 109.47264 * 330.00037 * 17 15 13 21 21 H 1.08999 * 109.46498 * 180.69832 * 1 2 3 22 22 H 1.08994 * 109.47206 * 300.69416 * 1 2 3 23 23 H 1.08996 * 109.46831 * 60.69881 * 1 2 3 24 24 H 1.09007 * 110.75467 * 274.99316 * 4 2 1 25 25 H 1.09003 * 110.75349 * 38.36041 * 4 2 1 26 26 H 1.08995 * 110.48554 * 203.38165 * 5 4 2 27 27 H 1.08995 * 110.60125 * 80.78770 * 5 4 2 28 28 H 1.09003 * 109.47381 * 307.17162 * 8 6 5 29 29 H 1.09003 * 109.47113 * 67.17084 * 8 6 5 30 30 H 1.08996 * 109.47682 * 187.17002 * 8 6 5 31 31 H 1.08996 * 110.07267 * 240.69501 * 9 6 5 32 32 H 1.00891 * 111.00378 * 278.85093 * 10 9 6 33 33 H 1.09002 * 109.47246 * 305.74885 * 11 10 9 34 34 H 1.08997 * 109.46987 * 65.75243 * 11 10 9 35 35 H 1.09000 * 109.47276 * 299.99404 * 12 11 10 36 36 H 1.08997 * 109.47279 * 60.00280 * 12 11 10 37 37 H 0.96995 * 120.00401 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0750 -0.7816 1.2212 5 6 3.4939 -1.1946 0.7571 6 6 3.3186 -1.5368 -0.7368 7 1 3.1731 -2.6101 -0.8595 8 6 4.5466 -1.0810 -1.5275 9 6 2.0699 -0.7773 -1.2183 10 7 2.4326 0.1581 -2.2914 11 6 1.2782 0.4424 -3.1543 12 6 1.7259 1.3020 -4.3382 13 6 0.5414 1.5941 -5.2231 14 1 -0.4332 1.2059 -4.9664 15 6 0.7019 2.3579 -6.3597 16 7 -0.3318 2.6133 -7.1316 17 14 2.3872 3.0311 -6.8024 18 1 3.1018 2.0517 -7.6600 19 1 2.2310 4.3117 -7.5379 20 1 3.1684 3.2651 -5.5614 21 1 -0.3632 -1.0276 0.0125 22 1 -0.3633 0.5245 0.8836 23 1 -0.3633 0.5029 -0.8962 24 1 2.1279 -0.1381 2.0994 25 1 1.4628 -1.6609 1.4215 26 1 3.8370 -2.0685 1.3109 27 1 4.1933 -0.3677 0.8796 28 1 4.7440 -0.0297 -1.3181 29 1 5.4099 -1.6783 -1.2341 30 1 4.3608 -1.2103 -2.5937 31 1 1.3182 -1.4813 -1.5750 32 1 2.8199 1.0096 -1.9135 33 1 0.8606 -0.4946 -3.5230 34 1 0.5203 0.9779 -2.5825 35 1 2.1434 2.2389 -3.9696 36 1 2.4837 0.7665 -4.9100 37 1 -0.2189 3.1503 -7.9314 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379378114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:13 Heat of formation + Delta-G solvation = -46.026879 kcal Electronic energy + Delta-G solvation = -14467.221948 eV Core-core repulsion = 12242.339058 eV Total energy + Delta-G solvation = -2224.882890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29783 -36.39839 -34.58329 -33.41727 -31.72022 -29.37750 -27.08477 -25.19775 -24.49558 -22.24751 -21.28170 -19.99290 -18.94783 -16.73395 -16.72855 -16.31817 -15.74821 -14.97762 -14.72837 -14.57532 -14.25771 -13.99863 -13.58916 -13.46629 -13.24361 -12.90741 -12.60149 -12.48405 -12.11374 -11.80039 -11.66975 -11.61987 -11.53372 -11.40819 -11.39553 -11.23917 -11.17250 -10.77469 -9.10373 -8.30594 -6.34981 1.36680 1.37747 1.50813 2.36218 3.05095 3.35032 3.63885 3.78114 3.99248 4.28903 4.38561 4.44501 4.54886 4.57729 4.63934 4.69698 4.76403 4.85000 4.92815 4.99320 5.02487 5.08710 5.12652 5.24774 5.30124 5.34379 5.38107 5.48624 5.51909 5.56636 5.63618 5.72138 6.22810 6.30561 6.59768 6.74473 7.30022 8.86252 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042621 B = 0.007061 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.802477 B = 3964.712308 C = 4417.367146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.087 4.087 7 H 0.071 0.929 8 C -0.121 4.121 9 C 0.085 3.915 10 N -0.679 5.679 11 C 0.089 3.911 12 C -0.002 4.002 13 C -0.534 4.534 14 H 0.030 0.970 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.247 1.247 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.340 0.660 33 H 0.048 0.952 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.060 -6.836 17.348 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.106 4.106 7 H 0.089 0.911 8 C -0.178 4.178 9 C -0.025 4.025 10 N -0.309 5.309 11 C -0.040 4.040 12 C -0.040 4.040 13 C -0.572 4.572 14 H 0.048 0.952 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.171 1.171 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.251 -7.247 16.768 20.476 hybrid contribution -0.615 1.025 -0.294 1.231 sum 8.636 -6.222 16.474 19.613 Atomic orbital electron populations 1.21844 0.95287 1.01878 1.01236 1.22704 0.95698 0.99273 0.96619 0.91462 1.22467 0.96249 0.99697 0.96461 1.22433 0.96847 1.01577 0.94369 1.21765 0.94468 0.99055 0.95292 0.91098 1.21498 0.95882 1.00363 1.00084 1.22401 0.96500 0.94195 0.89411 1.60707 1.30668 1.17878 1.21637 1.21638 0.91175 0.97894 0.93336 1.19412 0.95266 0.95325 0.93987 1.21434 0.95443 1.32160 1.08174 0.95195 1.26008 1.01257 0.96077 0.95843 1.70066 1.32787 1.40674 1.15698 0.85585 0.79453 0.77847 0.79277 1.19317 1.20875 1.17063 0.92204 0.91694 0.94642 0.90743 0.90950 0.90462 0.91403 0.93299 0.92993 0.93376 0.91891 0.84160 0.93336 0.96484 0.96410 0.96235 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.12 71.98 0.66 -2.85 16 2 C -0.12 -2.85 3.08 -9.72 -0.03 -2.88 16 3 H 0.07 1.64 7.56 -2.38 -0.02 1.63 16 4 C -0.11 -1.98 6.33 31.89 0.20 -1.78 16 5 C -0.11 -2.02 6.36 31.67 0.20 -1.81 16 6 C -0.09 -1.93 3.50 -10.07 -0.04 -1.96 16 7 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 8 C -0.12 -2.83 8.12 71.98 0.58 -2.25 16 9 C 0.09 2.28 2.78 45.64 0.13 2.41 16 10 N -0.68 -22.04 4.32 -487.83 -2.11 -24.15 16 11 C 0.09 3.62 5.51 86.30 0.48 4.10 16 12 C 0.00 -0.10 4.35 29.85 0.13 0.03 16 13 C -0.53 -31.73 9.66 25.60 0.25 -31.49 16 14 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 15 C 0.00 0.29 5.47 84.65 0.46 0.75 16 16 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 17 Si 0.96 45.53 27.47 68.60 1.88 47.41 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.03 1.03 6.49 -2.39 -0.02 1.01 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.18 7.77 -2.39 -0.02 1.16 16 28 H 0.05 1.15 7.63 -2.39 -0.02 1.13 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.35 7.61 -2.39 -0.02 1.33 16 31 H 0.06 1.86 7.41 -2.39 -0.02 1.84 16 32 H 0.34 10.45 7.85 -89.70 -0.70 9.75 16 33 H 0.05 2.08 7.92 -2.39 -0.02 2.06 16 34 H 0.02 0.71 6.49 -2.39 -0.02 0.69 16 35 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 36 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -64.75 285.50 3.35 -61.40 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.25 Total: 13.63 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 3.02 Total: -37.73 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.81 Total: -84.71 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.41 kcal Total: -64.75 3.35 -61.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.373 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds