Wall clock time and date at job start Sun Mar 29 2020 21:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47011 * 2 1 4 4 N 1.46898 * 109.46659 * 119.99861 * 2 1 3 5 5 C 1.46899 * 111.00318 * 309.13709 * 4 2 1 6 6 C 1.50697 * 109.47133 * 199.79271 * 5 4 2 7 7 H 1.08002 * 120.00238 * 355.15338 * 6 5 4 8 8 C 1.37876 * 119.99846 * 175.15424 * 6 5 4 9 9 N 1.31521 * 119.99987 * 359.72781 * 8 6 5 10 10 Si 1.86796 * 120.00365 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47064 * 59.99827 * 10 8 6 12 12 H 1.48495 * 109.47491 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47066 * 300.00191 * 10 8 6 14 14 C 1.46896 * 111.00235 * 73.10255 * 4 2 1 15 15 C 1.52998 * 109.47388 * 66.03820 * 14 4 2 16 16 H 1.08997 * 115.55187 * 330.72585 * 15 14 4 17 17 C 1.53002 * 117.49797 * 116.39697 * 15 14 4 18 18 C 1.53001 * 60.00059 * 107.48779 * 17 15 14 19 19 H 1.08998 * 117.49472 * 107.48960 * 18 17 15 20 20 C 1.53002 * 117.49784 * 252.50665 * 18 17 15 21 21 H 1.09000 * 109.46748 * 300.00366 * 1 2 3 22 22 H 1.09005 * 109.47063 * 59.99741 * 1 2 3 23 23 H 1.08997 * 109.47476 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47003 * 240.00121 * 2 1 3 25 25 H 1.08999 * 109.46594 * 174.41843 * 3 2 1 26 26 H 1.09001 * 109.47029 * 294.41060 * 3 2 1 27 27 H 1.09000 * 109.46865 * 54.41763 * 3 2 1 28 28 H 1.09001 * 109.46402 * 79.79499 * 5 4 2 29 29 H 1.08998 * 109.47227 * 319.79574 * 5 4 2 30 30 H 0.96999 * 120.00027 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47401 * 186.04223 * 14 4 2 32 32 H 1.09003 * 109.46634 * 306.04016 * 14 4 2 33 33 H 1.08999 * 117.49791 * 214.97875 * 17 15 14 34 34 H 1.09005 * 117.49531 * 359.97239 * 17 15 14 35 35 H 1.09008 * 109.46683 * 128.62455 * 20 18 17 36 36 H 1.08999 * 109.46942 * 248.62182 * 20 18 17 37 37 H 1.08995 * 109.47265 * 8.62705 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3790 -0.1637 2.4110 6 6 2.2128 -0.5175 3.6154 7 1 3.0846 -1.1449 3.5032 8 6 1.8626 -0.0402 4.8606 9 7 0.8039 0.7282 4.9965 10 14 2.8956 -0.4793 6.3537 11 1 4.2829 0.0131 6.1579 12 1 2.3121 0.1545 7.5632 13 1 2.9136 -1.9541 6.5268 14 6 1.8192 -2.1435 1.0883 15 6 2.6990 -2.6953 -0.0352 16 1 2.9118 -2.0023 -0.8491 17 6 3.7954 -3.6905 0.3501 18 6 2.5468 -4.1760 -0.3891 19 1 2.6594 -4.4574 -1.4361 20 6 1.5266 -4.9916 0.4077 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1254 1.4441 0.1000 26 1 1.7607 1.9267 -0.9358 27 1 1.5974 1.9844 0.8358 28 1 0.3854 -0.5994 2.5162 29 1 1.2940 0.9202 2.3336 30 1 0.5573 1.0637 5.8725 31 1 2.0904 -2.6209 2.0299 32 1 0.7725 -2.3495 0.8647 33 1 4.7293 -3.6525 -0.2106 34 1 3.8901 -3.9517 1.4041 35 1 0.5341 -4.5605 0.2758 36 1 1.5258 -6.0214 0.0503 37 1 1.7928 -4.9739 1.4645 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:56 Heat of formation + Delta-G solvation = 13.864484 kcal Electronic energy + Delta-G solvation = -14702.024163 eV Core-core repulsion = 12479.738357 eV Total energy + Delta-G solvation = -2222.285806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.50571 -36.53813 -32.72798 -30.84276 -28.45827 -27.31660 -26.49513 -24.70499 -22.27323 -21.21260 -19.54278 -18.01007 -16.55835 -15.74957 -14.64508 -14.51257 -13.90842 -13.87301 -13.18589 -12.89910 -12.41542 -12.26130 -12.19226 -11.79300 -11.65108 -11.31809 -11.19647 -10.95863 -10.82627 -10.68330 -10.45329 -10.40838 -10.17597 -9.61168 -9.47025 -9.25911 -9.12366 -8.35137 -7.09008 -5.96597 -3.96969 3.36404 3.40280 3.43611 4.10069 4.47215 4.90790 5.02234 5.26650 5.34641 5.39206 5.52718 5.56687 5.74454 5.90254 5.95856 6.01304 6.08122 6.14056 6.18781 6.19275 6.29267 6.33951 6.44455 6.50791 6.52277 6.55545 6.84950 6.88313 6.91438 7.36504 7.43730 7.89455 8.21345 8.34465 8.65514 9.10852 9.66560 11.13830 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022863 B = 0.010393 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.371171 B = 2693.428740 C = 3457.725530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 C -0.138 4.138 4 N -0.528 5.528 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.094 3.906 15 C -0.134 4.134 16 H 0.101 0.899 17 C -0.172 4.172 18 C -0.165 4.165 19 H 0.095 0.905 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.059 0.941 28 H -0.011 1.011 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -5.860 -10.062 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.036 4.036 3 C -0.196 4.196 4 N -0.251 5.251 5 C 0.068 3.932 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.034 4.034 15 C -0.152 4.152 16 H 0.119 0.881 17 C -0.209 4.209 18 C -0.183 4.183 19 H 0.113 0.887 20 C -0.178 4.178 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.006 0.994 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.755 -5.659 -9.865 11.508 hybrid contribution -0.369 -0.310 0.794 0.929 sum 1.386 -5.970 -9.071 10.947 Atomic orbital electron populations 1.22467 0.98666 1.01242 1.01813 1.21656 0.92006 0.95393 0.94511 1.21789 1.01714 0.95615 1.00477 1.62309 1.58386 1.01849 1.02607 1.19738 0.92330 0.95753 0.85415 1.21177 1.11223 1.30415 0.91269 0.92110 1.24973 0.95361 0.95361 0.98969 1.69947 1.25791 1.34604 1.23755 0.86605 0.80558 0.78511 0.81981 1.20226 1.21450 1.20381 1.21514 0.95276 0.89871 0.96756 1.22492 1.01092 0.90695 1.00968 0.88115 1.23080 0.92611 1.04491 1.00754 1.22353 0.99595 0.97136 0.99256 0.88667 1.21308 0.98230 0.98449 0.99782 0.91667 0.93521 0.93338 0.91602 0.92257 0.93790 0.92178 0.99355 0.94511 0.93005 0.90241 0.95713 0.89610 0.88778 0.92416 0.92896 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.49 37.16 0.32 -2.90 16 2 C 0.07 1.35 2.77 -67.71 -0.19 1.16 16 3 C -0.14 -2.43 9.11 37.16 0.34 -2.09 16 4 N -0.53 -11.40 4.35 -228.08 -0.99 -12.39 16 5 C 0.19 4.99 3.28 -4.98 -0.02 4.97 16 6 C -0.50 -14.22 8.62 -34.44 -0.30 -14.52 16 7 H 0.06 1.72 7.66 -52.49 -0.40 1.32 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 C 0.09 1.83 4.05 -3.83 -0.02 1.81 16 15 C -0.13 -2.16 5.61 -90.62 -0.51 -2.67 16 16 H 0.10 1.60 6.37 -51.93 -0.33 1.27 16 17 C -0.17 -2.54 9.82 -26.73 -0.26 -2.80 16 18 C -0.16 -2.25 6.41 -90.62 -0.58 -2.83 16 19 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 20 C -0.12 -1.57 9.19 37.16 0.34 -1.23 16 21 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.84 6.71 -51.93 -0.35 0.49 16 24 H 0.07 1.10 6.04 -51.93 -0.31 0.79 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.17 6.59 -51.93 -0.34 0.83 16 28 H -0.01 -0.31 7.34 -51.93 -0.38 -0.69 16 29 H 0.04 1.02 6.02 -51.93 -0.31 0.71 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.08 1.71 7.06 -51.93 -0.37 1.34 16 32 H 0.02 0.48 6.19 -51.93 -0.32 0.16 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.46 7.94 -51.93 -0.41 1.05 16 35 H 0.06 0.76 7.83 -51.92 -0.41 0.36 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -29.13 288.78 -8.26 -37.39 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.37 Total: -0.42 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -0.97 Total: -19.65 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.26 Total: -38.57 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.13 -8.26 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.257 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds