Wall clock time and date at job start Sun Mar 29 2020 21:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47011 * 2 1 4 4 N 1.46898 * 109.46659 * 119.99861 * 2 1 3 5 5 C 1.46899 * 111.00318 * 309.13709 * 4 2 1 6 6 C 1.50697 * 109.47133 * 199.79271 * 5 4 2 7 7 H 1.08002 * 120.00238 * 355.15338 * 6 5 4 8 8 C 1.37876 * 119.99846 * 175.15424 * 6 5 4 9 9 N 1.31521 * 119.99987 * 359.72781 * 8 6 5 10 10 Si 1.86796 * 120.00365 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47064 * 59.99827 * 10 8 6 12 12 H 1.48495 * 109.47491 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47066 * 300.00191 * 10 8 6 14 14 C 1.46896 * 111.00235 * 73.10255 * 4 2 1 15 15 C 1.52998 * 109.47388 * 66.03820 * 14 4 2 16 16 H 1.08997 * 115.55187 * 330.72585 * 15 14 4 17 17 C 1.53002 * 117.49797 * 116.39697 * 15 14 4 18 18 C 1.53001 * 60.00059 * 107.48779 * 17 15 14 19 19 H 1.08998 * 117.49472 * 107.48960 * 18 17 15 20 20 C 1.53002 * 117.49784 * 252.50665 * 18 17 15 21 21 H 1.09000 * 109.46748 * 300.00366 * 1 2 3 22 22 H 1.09005 * 109.47063 * 59.99741 * 1 2 3 23 23 H 1.08997 * 109.47476 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47003 * 240.00121 * 2 1 3 25 25 H 1.08999 * 109.46594 * 174.41843 * 3 2 1 26 26 H 1.09001 * 109.47029 * 294.41060 * 3 2 1 27 27 H 1.09000 * 109.46865 * 54.41763 * 3 2 1 28 28 H 1.09001 * 109.46402 * 79.79499 * 5 4 2 29 29 H 1.08998 * 109.47227 * 319.79574 * 5 4 2 30 30 H 0.96999 * 120.00027 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47401 * 186.04223 * 14 4 2 32 32 H 1.09003 * 109.46634 * 306.04016 * 14 4 2 33 33 H 1.08999 * 117.49791 * 214.97875 * 17 15 14 34 34 H 1.09005 * 117.49531 * 359.97239 * 17 15 14 35 35 H 1.09008 * 109.46683 * 128.62455 * 20 18 17 36 36 H 1.08999 * 109.46942 * 248.62182 * 20 18 17 37 37 H 1.08995 * 109.47265 * 8.62705 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3790 -0.1637 2.4110 6 6 2.2128 -0.5175 3.6154 7 1 3.0846 -1.1449 3.5032 8 6 1.8626 -0.0402 4.8606 9 7 0.8039 0.7282 4.9965 10 14 2.8956 -0.4793 6.3537 11 1 4.2829 0.0131 6.1579 12 1 2.3121 0.1545 7.5632 13 1 2.9136 -1.9541 6.5268 14 6 1.8192 -2.1435 1.0883 15 6 2.6990 -2.6953 -0.0352 16 1 2.9118 -2.0023 -0.8491 17 6 3.7954 -3.6905 0.3501 18 6 2.5468 -4.1760 -0.3891 19 1 2.6594 -4.4574 -1.4361 20 6 1.5266 -4.9916 0.4077 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1254 1.4441 0.1000 26 1 1.7607 1.9267 -0.9358 27 1 1.5974 1.9844 0.8358 28 1 0.3854 -0.5994 2.5162 29 1 1.2940 0.9202 2.3336 30 1 0.5573 1.0637 5.8725 31 1 2.0904 -2.6209 2.0299 32 1 0.7725 -2.3495 0.8647 33 1 4.7293 -3.6525 -0.2106 34 1 3.8901 -3.9517 1.4041 35 1 0.5341 -4.5605 0.2758 36 1 1.5258 -6.0214 0.0503 37 1 1.7928 -4.9739 1.4645 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:56 Heat of formation + Delta-G solvation = -3.268478 kcal Electronic energy + Delta-G solvation = -14702.767104 eV Core-core repulsion = 12479.738357 eV Total energy + Delta-G solvation = -2223.028746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97065 -37.93720 -34.86637 -32.48093 -29.88265 -28.93703 -27.98129 -26.47510 -24.15309 -22.46587 -20.91570 -19.50708 -18.61450 -17.21116 -16.53691 -16.20707 -15.46077 -15.28929 -14.72670 -14.22960 -14.13925 -13.85747 -13.58430 -13.43409 -13.03313 -12.90880 -12.74845 -12.64153 -12.31214 -12.22675 -12.11128 -12.08343 -11.93672 -11.28341 -11.18833 -10.71243 -10.55142 -10.53067 -8.86099 -8.17019 -6.26585 1.39150 1.42329 1.50161 2.40750 2.88153 3.13844 3.40013 3.82407 4.00918 4.09369 4.12587 4.28947 4.48143 4.49199 4.64043 4.71049 4.74976 4.81745 4.92528 4.96239 4.97587 5.02188 5.06889 5.07665 5.18211 5.20181 5.35388 5.43105 5.44230 5.46655 5.51167 5.69609 6.14165 6.51050 6.76061 6.89976 7.42407 8.92617 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022863 B = 0.010393 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.371171 B = 2693.428740 C = 3457.725530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 C -0.134 4.134 4 N -0.537 5.537 5 C 0.214 3.786 6 C -0.520 4.520 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.102 3.898 15 C -0.151 4.151 16 H 0.110 0.890 17 C -0.174 4.174 18 C -0.141 4.141 19 H 0.123 0.877 20 C -0.124 4.124 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.030 0.970 28 H -0.042 1.042 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.021 0.979 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -6.931 -11.524 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 C -0.191 4.191 4 N -0.261 5.261 5 C 0.087 3.913 6 C -0.559 4.559 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.026 4.026 15 C -0.169 4.169 16 H 0.128 0.872 17 C -0.211 4.211 18 C -0.160 4.160 19 H 0.141 0.859 20 C -0.181 4.181 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.049 0.951 28 H -0.024 1.024 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.767 -6.739 -11.347 13.484 hybrid contribution -0.710 0.017 1.202 1.396 sum 2.056 -6.722 -10.145 12.343 Atomic orbital electron populations 1.22371 0.98107 1.01170 1.01730 1.21841 0.92533 0.95764 0.93809 1.21760 1.01102 0.95098 1.01151 1.62238 1.58143 1.03315 1.02395 1.19304 0.90763 0.94048 0.87140 1.21491 1.11323 1.30432 0.92624 0.92610 1.25861 0.96520 0.95105 1.02124 1.70077 1.27337 1.35526 1.24600 0.85522 0.78926 0.78628 0.78065 1.19442 1.20753 1.19420 1.21383 0.95935 0.88414 0.96888 1.22343 1.02014 0.92372 1.00198 0.87249 1.23136 0.93706 1.03731 1.00540 1.22484 0.98384 0.94577 1.00534 0.85892 1.21354 0.97832 0.99978 0.98932 0.94977 0.90258 0.93413 0.88821 0.92728 0.90148 0.95118 1.02407 0.96954 0.92815 0.93277 0.96130 0.87626 0.90262 0.92823 0.90328 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.08 8.49 71.98 0.61 -5.47 16 2 C 0.07 2.47 2.77 44.92 0.12 2.59 16 3 C -0.13 -4.59 9.11 71.98 0.66 -3.94 16 4 N -0.54 -23.61 4.35 -875.53 -3.81 -27.42 16 5 C 0.21 11.59 3.28 85.56 0.28 11.87 16 6 C -0.52 -30.41 8.62 25.60 0.22 -30.19 16 7 H 0.06 3.24 7.66 -2.91 -0.02 3.22 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 10 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 C 0.10 4.01 4.05 86.30 0.35 4.36 16 15 C -0.15 -4.62 5.61 -10.79 -0.06 -4.68 16 16 H 0.11 3.17 6.37 -2.39 -0.02 3.16 16 17 C -0.17 -4.81 9.82 30.60 0.30 -4.51 16 18 C -0.14 -3.47 6.41 -10.79 -0.07 -3.54 16 19 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 20 C -0.12 -3.01 9.19 71.98 0.66 -2.35 16 21 H 0.03 1.31 6.66 -2.39 -0.02 1.29 16 22 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.05 1.64 6.71 -2.39 -0.02 1.62 16 24 H 0.09 2.88 6.04 -2.39 -0.01 2.86 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.21 6.59 -2.39 -0.02 1.20 16 28 H -0.04 -2.46 7.34 -2.39 -0.02 -2.48 16 29 H 0.01 0.73 6.02 -2.39 -0.01 0.71 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.05 2.19 7.06 -2.39 -0.02 2.18 16 32 H 0.02 0.82 6.19 -2.39 -0.01 0.80 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.08 2.42 7.94 -2.38 -0.02 2.40 16 35 H 0.05 1.35 7.83 -2.38 -0.02 1.33 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.18 7.90 -2.39 -0.02 1.16 16 Total: -1.00 -64.28 288.78 3.05 -61.22 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.01 Total: 11.10 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.54 Total: -35.31 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.52 Total: -84.50 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.28 3.05 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.955 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds