Wall clock time and date at job start Sun Mar 29 2020 21:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 N 1.46900 * 109.47034 * 120.00036 * 2 1 3 5 5 C 1.46903 * 110.99852 * 164.58133 * 4 2 1 6 6 C 1.50699 * 109.46990 * 287.87637 * 5 4 2 7 7 H 1.07999 * 120.00144 * 4.82930 * 6 5 4 8 8 C 1.37877 * 119.99971 * 184.82962 * 6 5 4 9 9 N 1.31513 * 119.99737 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99827 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46912 * 89.99984 * 10 8 6 12 12 H 1.48497 * 109.47065 * 209.99572 * 10 8 6 13 13 H 1.48497 * 109.47318 * 329.99970 * 10 8 6 14 14 C 1.46903 * 110.99802 * 288.52931 * 4 2 1 15 15 C 1.53006 * 109.46711 * 77.40364 * 14 4 2 16 16 H 1.09003 * 115.56098 * 30.22505 * 15 14 4 17 17 C 1.53073 * 117.49267 * 244.51681 * 15 14 4 18 18 C 1.52999 * 59.98568 * 252.51753 * 17 15 14 19 19 H 1.08995 * 117.50233 * 107.50013 * 18 17 15 20 20 C 1.53007 * 117.49628 * 252.50260 * 18 17 15 21 21 H 1.09002 * 109.46922 * 309.79757 * 1 2 3 22 22 H 1.08995 * 109.47019 * 69.80296 * 1 2 3 23 23 H 1.08994 * 109.47062 * 189.80023 * 1 2 3 24 24 H 1.08997 * 109.47314 * 240.00123 * 2 1 3 25 25 H 1.08994 * 109.47641 * 171.75161 * 3 2 1 26 26 H 1.09004 * 109.47058 * 291.75263 * 3 2 1 27 27 H 1.09000 * 109.47251 * 51.75229 * 3 2 1 28 28 H 1.08997 * 109.46925 * 47.88078 * 5 4 2 29 29 H 1.09000 * 109.46787 * 167.87386 * 5 4 2 30 30 H 0.97007 * 119.99816 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47627 * 317.40868 * 14 4 2 32 32 H 1.09001 * 109.47158 * 197.39843 * 14 4 2 33 33 H 1.08996 * 117.51118 * 145.04004 * 17 15 14 34 34 H 1.08998 * 117.51370 * 359.97438 * 17 15 14 35 35 H 1.08995 * 109.47039 * 8.74294 * 20 18 17 36 36 H 1.09000 * 109.46961 * 248.73892 * 20 18 17 37 37 H 1.09003 * 109.46875 * 128.74194 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4417 -1.0361 1.0653 6 6 3.5953 -2.1613 0.0747 7 1 2.7342 -2.5270 -0.4650 8 6 4.8351 -2.7240 -0.1427 9 7 4.9690 -3.7063 -1.0068 10 14 6.3243 -2.0920 0.7913 11 1 6.4752 -2.8546 2.0566 12 1 7.5416 -2.2678 -0.0408 13 1 6.1399 -0.6514 1.1006 14 6 1.7842 0.1129 2.4053 15 6 0.3123 0.0075 2.8094 16 1 -0.1790 -0.9319 2.5560 17 6 -0.5299 1.2844 2.7501 18 6 -0.1164 0.7024 4.1034 19 1 0.6502 1.2342 4.6669 20 6 -1.2020 0.0254 4.9426 21 1 -0.3633 0.6578 0.7896 22 1 -0.3633 0.3548 -0.9644 23 1 -0.3633 -1.0126 0.1749 24 1 1.8934 -0.5138 -0.8900 25 1 3.1200 1.4461 0.1474 26 1 1.8021 1.9120 -0.9545 27 1 1.5614 1.9971 0.8071 28 1 3.9944 -0.1648 0.7141 29 1 3.8328 -1.3484 2.0336 30 1 5.8413 -4.1020 -1.1600 31 1 2.0310 1.1546 2.2004 32 1 2.4112 -0.2563 3.2169 33 1 -1.5752 1.1849 2.4577 34 1 -0.0352 2.1991 2.4237 35 1 -2.1121 -0.0704 4.3504 36 1 -1.4059 0.6282 5.8275 37 1 -0.8612 -0.9640 5.2476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:58 Heat of formation + Delta-G solvation = 24.282665 kcal Electronic energy + Delta-G solvation = -14711.387415 eV Core-core repulsion = 12489.553376 eV Total energy + Delta-G solvation = -2221.834039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88178 -36.43256 -32.68327 -31.05157 -29.28799 -27.44893 -26.69002 -24.59594 -21.80704 -21.19452 -19.93582 -18.60885 -16.66863 -15.60679 -14.76163 -14.71544 -14.09535 -13.94351 -13.30772 -12.96743 -12.84982 -12.35959 -12.20574 -11.94914 -11.76433 -11.54095 -11.34523 -11.19493 -10.96663 -10.65446 -10.52994 -10.27771 -9.98178 -9.90226 -9.52854 -9.30812 -9.15467 -8.52731 -7.25183 -6.01488 -3.97518 3.30034 3.37456 3.39316 3.94370 4.44816 4.61342 4.99537 5.07986 5.21674 5.32216 5.39313 5.54847 5.71615 5.79286 5.80730 5.84402 5.95514 6.00217 6.05862 6.07615 6.16936 6.22752 6.28518 6.34714 6.38719 6.49639 6.68345 6.77721 6.83474 7.02022 7.10501 7.67861 8.02243 8.16818 8.72354 9.08582 9.60887 11.11933 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.008251 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.139334 B = 3392.675487 C = 3674.334349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.083 3.917 3 C -0.181 4.181 4 N -0.518 5.518 5 C 0.161 3.839 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.874 3.126 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.072 3.928 15 C -0.120 4.120 16 H 0.111 0.889 17 C -0.181 4.181 18 C -0.164 4.164 19 H 0.097 0.903 20 C -0.119 4.119 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.051 0.949 28 H -0.010 1.010 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 10.239 7.627 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 C -0.240 4.240 4 N -0.241 5.241 5 C 0.034 3.966 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.701 3.299 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.057 4.057 15 C -0.139 4.139 16 H 0.129 0.871 17 C -0.218 4.218 18 C -0.183 4.183 19 H 0.115 0.885 20 C -0.176 4.176 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.224 9.661 7.590 15.363 hybrid contribution 1.423 1.014 0.337 1.779 sum -7.801 10.674 7.927 15.416 Atomic orbital electron populations 1.22165 0.95780 1.02328 1.00724 1.21571 0.94531 0.91419 0.95090 1.22450 1.01468 0.99213 1.00884 1.62111 1.20505 1.41055 1.00441 1.20206 0.83608 0.95744 0.97004 1.21047 0.95549 1.15792 1.21806 0.90190 1.24897 0.98558 0.94780 0.95181 1.69898 1.24019 1.25012 1.35192 0.86882 0.82972 0.79762 0.80239 1.20211 1.21270 1.19409 1.21791 0.93434 0.96330 0.94100 1.22559 0.96255 0.96425 0.98643 0.87057 1.23180 1.00343 0.98036 1.00275 1.22469 1.01325 1.04221 0.90292 0.88470 1.21321 0.97175 1.00145 0.98961 0.91549 0.93936 0.92322 0.89144 0.92686 0.93036 0.93050 0.99244 0.96058 0.92753 0.94483 0.91598 0.89211 0.89402 0.92770 0.92756 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.19 37.16 0.30 -2.14 16 2 C 0.08 1.57 2.78 -67.71 -0.19 1.39 16 3 C -0.18 -3.04 8.17 37.16 0.30 -2.73 16 4 N -0.52 -10.82 4.37 -228.08 -1.00 -11.82 16 5 C 0.16 3.92 3.71 -4.97 -0.02 3.90 16 6 C -0.50 -14.44 9.02 -34.44 -0.31 -14.75 16 7 H 0.08 2.50 7.74 -52.49 -0.41 2.10 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 10 Si 0.87 21.75 27.38 -169.99 -4.65 17.09 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.47 6.68 56.52 0.38 -6.09 16 14 C 0.07 1.24 5.01 -3.82 -0.02 1.23 16 15 C -0.12 -1.76 3.73 -90.58 -0.34 -2.09 16 16 H 0.11 1.78 7.97 -51.93 -0.41 1.36 16 17 C -0.18 -2.22 7.39 -26.69 -0.20 -2.42 16 18 C -0.16 -2.01 6.13 -90.61 -0.56 -2.56 16 19 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.12 -1.26 10.19 37.16 0.38 -0.88 16 21 H 0.07 0.95 3.83 -51.93 -0.20 0.75 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 24 H 0.09 1.99 6.98 -51.93 -0.36 1.63 16 25 H 0.05 1.00 6.57 -51.93 -0.34 0.66 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.77 5.96 -51.93 -0.31 0.46 16 28 H -0.01 -0.25 5.88 -51.93 -0.31 -0.55 16 29 H 0.02 0.53 6.82 -51.93 -0.35 0.17 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.04 0.62 5.11 -51.93 -0.27 0.35 16 32 H 0.07 1.17 7.61 -51.93 -0.40 0.77 16 33 H 0.09 1.01 8.02 -51.93 -0.42 0.60 16 34 H 0.09 1.06 7.59 -51.93 -0.39 0.67 16 35 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 281.51 15.07 4.24 4.24 Total: -1.00 -29.76 281.51 -7.64 -37.39 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.27 Total: -0.60 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.74 Total: -19.20 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.22 Total: -38.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.65 Total: 17.09 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.76 -7.64 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.678 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds