Wall clock time and date at job start Sun Mar 29 2020 21:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 N 1.46900 * 109.47034 * 120.00036 * 2 1 3 5 5 C 1.46903 * 110.99852 * 164.58133 * 4 2 1 6 6 C 1.50699 * 109.46990 * 287.87637 * 5 4 2 7 7 H 1.07999 * 120.00144 * 4.82930 * 6 5 4 8 8 C 1.37877 * 119.99971 * 184.82962 * 6 5 4 9 9 N 1.31513 * 119.99737 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99827 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46912 * 89.99984 * 10 8 6 12 12 H 1.48497 * 109.47065 * 209.99572 * 10 8 6 13 13 H 1.48497 * 109.47318 * 329.99970 * 10 8 6 14 14 C 1.46903 * 110.99802 * 288.52931 * 4 2 1 15 15 C 1.53006 * 109.46711 * 77.40364 * 14 4 2 16 16 H 1.09003 * 115.56098 * 30.22505 * 15 14 4 17 17 C 1.53073 * 117.49267 * 244.51681 * 15 14 4 18 18 C 1.52999 * 59.98568 * 252.51753 * 17 15 14 19 19 H 1.08995 * 117.50233 * 107.50013 * 18 17 15 20 20 C 1.53007 * 117.49628 * 252.50260 * 18 17 15 21 21 H 1.09002 * 109.46922 * 309.79757 * 1 2 3 22 22 H 1.08995 * 109.47019 * 69.80296 * 1 2 3 23 23 H 1.08994 * 109.47062 * 189.80023 * 1 2 3 24 24 H 1.08997 * 109.47314 * 240.00123 * 2 1 3 25 25 H 1.08994 * 109.47641 * 171.75161 * 3 2 1 26 26 H 1.09004 * 109.47058 * 291.75263 * 3 2 1 27 27 H 1.09000 * 109.47251 * 51.75229 * 3 2 1 28 28 H 1.08997 * 109.46925 * 47.88078 * 5 4 2 29 29 H 1.09000 * 109.46787 * 167.87386 * 5 4 2 30 30 H 0.97007 * 119.99816 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47627 * 317.40868 * 14 4 2 32 32 H 1.09001 * 109.47158 * 197.39843 * 14 4 2 33 33 H 1.08996 * 117.51118 * 145.04004 * 17 15 14 34 34 H 1.08998 * 117.51370 * 359.97438 * 17 15 14 35 35 H 1.08995 * 109.47039 * 8.74294 * 20 18 17 36 36 H 1.09000 * 109.46961 * 248.73892 * 20 18 17 37 37 H 1.09003 * 109.46875 * 128.74194 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4417 -1.0361 1.0653 6 6 3.5953 -2.1613 0.0747 7 1 2.7342 -2.5270 -0.4650 8 6 4.8351 -2.7240 -0.1427 9 7 4.9690 -3.7063 -1.0068 10 14 6.3243 -2.0920 0.7913 11 1 6.4752 -2.8546 2.0566 12 1 7.5416 -2.2678 -0.0408 13 1 6.1399 -0.6514 1.1006 14 6 1.7842 0.1129 2.4053 15 6 0.3123 0.0075 2.8094 16 1 -0.1790 -0.9319 2.5560 17 6 -0.5299 1.2844 2.7501 18 6 -0.1164 0.7024 4.1034 19 1 0.6502 1.2342 4.6669 20 6 -1.2020 0.0254 4.9426 21 1 -0.3633 0.6578 0.7896 22 1 -0.3633 0.3548 -0.9644 23 1 -0.3633 -1.0126 0.1749 24 1 1.8934 -0.5138 -0.8900 25 1 3.1200 1.4461 0.1474 26 1 1.8021 1.9120 -0.9545 27 1 1.5614 1.9971 0.8071 28 1 3.9944 -0.1648 0.7141 29 1 3.8328 -1.3484 2.0336 30 1 5.8413 -4.1020 -1.1600 31 1 2.0310 1.1546 2.2004 32 1 2.4112 -0.2563 3.2169 33 1 -1.5752 1.1849 2.4577 34 1 -0.0352 2.1991 2.4237 35 1 -2.1121 -0.0704 4.3504 36 1 -1.4059 0.6282 5.8275 37 1 -0.8612 -0.9640 5.2476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:58 Heat of formation + Delta-G solvation = 5.597186 kcal Electronic energy + Delta-G solvation = -14712.197678 eV Core-core repulsion = 12489.553376 eV Total energy + Delta-G solvation = -2222.644302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21895 -37.72368 -34.82652 -32.69821 -30.61232 -28.94702 -28.03274 -26.12280 -23.61786 -22.40476 -21.03335 -20.11277 -18.84097 -17.12646 -16.39081 -16.10210 -15.75621 -15.20358 -14.76352 -14.42488 -14.36940 -13.87155 -13.47736 -13.30098 -13.03593 -12.95717 -12.81646 -12.58503 -12.44025 -12.15261 -12.00377 -11.89786 -11.73401 -11.49443 -11.36243 -10.77272 -10.62531 -10.34423 -8.88223 -8.28086 -6.30160 1.32912 1.34187 1.45116 2.33723 2.89241 3.04445 3.24838 3.90384 4.05184 4.07956 4.17811 4.32438 4.48212 4.54413 4.60581 4.66312 4.70873 4.83686 4.91565 4.93833 4.96226 5.01821 5.02603 5.04304 5.12979 5.20767 5.26019 5.42285 5.48378 5.52905 5.55936 5.60687 6.07221 6.51515 6.73804 6.77076 7.32870 8.89015 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.008251 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.139334 B = 3392.675487 C = 3674.334349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 C -0.173 4.173 4 N -0.537 5.537 5 C 0.171 3.829 6 C -0.511 4.511 7 H 0.034 0.966 8 C 0.006 3.994 9 N -0.950 5.950 10 Si 0.947 3.053 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.075 3.925 15 C -0.143 4.143 16 H 0.093 0.907 17 C -0.167 4.167 18 C -0.151 4.151 19 H 0.104 0.896 20 C -0.119 4.119 21 H 0.089 0.911 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.074 0.926 28 H -0.010 1.010 29 H 0.023 0.977 30 H 0.266 0.734 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 12.664 9.451 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 C -0.231 4.231 4 N -0.260 5.260 5 C 0.044 3.956 6 C -0.549 4.549 7 H 0.052 0.948 8 C -0.191 4.191 9 N -0.591 5.591 10 Si 0.771 3.229 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.176 1.176 14 C -0.053 4.053 15 C -0.161 4.161 16 H 0.111 0.889 17 C -0.204 4.204 18 C -0.170 4.170 19 H 0.122 0.878 20 C -0.176 4.176 21 H 0.107 0.893 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.008 0.992 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.720 12.102 9.422 18.158 hybrid contribution 1.467 0.217 -0.274 1.508 sum -8.253 12.319 9.148 17.423 Atomic orbital electron populations 1.22083 0.93284 1.02015 1.02518 1.21565 0.96478 0.92284 0.92673 1.22350 1.00287 0.97644 1.02828 1.62027 1.18064 1.43347 1.02563 1.19935 0.86226 0.94012 0.95397 1.21274 0.94299 1.17020 1.22345 0.94801 1.25852 1.02157 0.94913 0.96180 1.70058 1.25122 1.26749 1.37149 0.85713 0.78339 0.79986 0.78882 1.19056 1.20628 1.17638 1.21818 0.95318 0.96147 0.91990 1.22300 0.94761 0.97140 1.01936 0.88862 1.23265 1.00584 0.96597 0.99905 1.22568 1.01488 1.02950 0.89966 0.87798 1.21349 0.96760 1.00027 0.99491 0.89273 0.92268 0.93991 0.93582 0.94495 0.91288 0.90679 0.99248 0.95920 0.92491 0.93236 0.92393 0.87829 0.88503 0.92266 0.90968 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.19 71.98 0.59 -3.81 16 2 C 0.08 3.01 2.78 44.92 0.12 3.13 16 3 C -0.17 -5.48 8.17 71.98 0.59 -4.89 16 4 N -0.54 -22.60 4.37 -875.50 -3.83 -26.43 16 5 C 0.17 8.46 3.71 85.56 0.32 8.78 16 6 C -0.51 -30.51 9.02 25.60 0.23 -30.28 16 7 H 0.03 2.27 7.74 -2.91 -0.02 2.24 16 8 C 0.01 0.35 5.47 84.65 0.46 0.81 16 9 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 10 Si 0.95 45.10 27.38 68.60 1.88 46.98 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.25 -11.25 6.68 99.48 0.66 -10.59 16 14 C 0.07 2.49 5.01 86.30 0.43 2.92 16 15 C -0.14 -3.90 3.73 -10.77 -0.04 -3.94 16 16 H 0.09 2.92 7.97 -2.39 -0.02 2.90 16 17 C -0.17 -3.48 7.39 30.62 0.23 -3.25 16 18 C -0.15 -3.22 6.13 -10.79 -0.07 -3.29 16 19 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 20 C -0.12 -2.17 10.19 71.98 0.73 -1.44 16 21 H 0.09 2.33 3.83 -2.39 -0.01 2.32 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 24 H 0.05 2.14 6.98 -2.39 -0.02 2.12 16 25 H 0.04 1.29 6.57 -2.39 -0.02 1.28 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 2.01 5.96 -2.39 -0.01 2.00 16 28 H -0.01 -0.49 5.88 -2.39 -0.01 -0.51 16 29 H 0.02 1.11 6.82 -2.39 -0.02 1.09 16 30 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 31 H 0.05 1.51 5.11 -2.39 -0.01 1.50 16 32 H 0.06 1.98 7.61 -2.39 -0.02 1.97 16 33 H 0.10 1.91 8.02 -2.39 -0.02 1.90 16 34 H 0.10 1.89 7.59 -2.39 -0.02 1.87 16 35 H 0.06 1.02 7.90 -2.39 -0.02 1.00 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -66.55 281.51 2.93 -63.63 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.98 Total: 11.50 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.60 Total: -35.26 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -3.53 Total: -86.85 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -66.55 2.93 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.225 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds