Wall clock time and date at job start Sun Mar 29 2020 21:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 N 1.46906 * 109.47141 * 119.99623 * 2 1 3 5 5 C 1.46901 * 110.99628 * 309.12529 * 4 2 1 6 6 C 1.50701 * 109.46707 * 199.78361 * 5 4 2 7 7 H 1.08001 * 120.00466 * 355.14840 * 6 5 4 8 8 C 1.37876 * 119.99917 * 175.14757 * 6 5 4 9 9 N 1.31517 * 119.99966 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47194 * 269.99908 * 10 8 6 12 12 H 1.48501 * 109.46888 * 29.99892 * 10 8 6 13 13 H 1.48499 * 109.47381 * 149.99576 * 10 8 6 14 14 C 1.46900 * 110.99917 * 73.07690 * 4 2 1 15 15 C 1.53000 * 109.47123 * 66.04475 * 14 4 2 16 16 H 1.09002 * 115.54878 * 29.28563 * 15 14 4 17 17 C 1.52995 * 117.50043 * 243.60811 * 15 14 4 18 18 C 1.52997 * 117.49857 * 174.98141 * 15 14 4 19 19 H 1.09000 * 117.50119 * 214.97813 * 18 15 14 20 20 C 1.53002 * 117.49818 * 0.02562 * 18 15 14 21 21 H 1.09003 * 109.47083 * 300.00601 * 1 2 3 22 22 H 1.09001 * 109.46968 * 60.00360 * 1 2 3 23 23 H 1.08994 * 109.47689 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47043 * 239.99438 * 2 1 3 25 25 H 1.09003 * 109.47231 * 174.43077 * 3 2 1 26 26 H 1.09000 * 109.46721 * 294.42639 * 3 2 1 27 27 H 1.08997 * 109.47567 * 54.42432 * 3 2 1 28 28 H 1.08999 * 109.47082 * 79.78747 * 5 4 2 29 29 H 1.09000 * 109.47596 * 319.78430 * 5 4 2 30 30 H 0.97000 * 119.99893 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47351 * 186.05187 * 14 4 2 32 32 H 1.09000 * 109.47274 * 306.04745 * 14 4 2 33 33 H 1.08999 * 117.50184 * 0.02562 * 17 15 14 34 34 H 1.09001 * 117.49774 * 145.02024 * 17 15 14 35 35 H 1.08993 * 109.47162 * 59.99575 * 20 18 15 36 36 H 1.09007 * 109.46911 * 179.97438 * 20 18 15 37 37 H 1.08999 * 109.46861 * 299.98946 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3792 -0.1633 2.4111 6 6 2.2130 -0.5173 3.6154 7 1 3.0847 -1.1450 3.5032 8 6 1.8632 -0.0397 4.8606 9 7 0.8021 0.7252 4.9972 10 14 2.8971 -0.4777 6.3534 11 1 2.3812 -1.7298 6.9628 12 1 4.3089 -0.6750 5.9371 13 1 2.8234 0.6234 7.3471 14 6 1.8188 -2.1434 1.0887 15 6 2.6982 -2.6957 -0.0350 16 1 3.6233 -2.1496 -0.2194 17 6 1.9940 -3.3202 -1.2411 18 6 2.7213 -4.2126 -0.2333 19 1 3.6617 -4.6647 -0.5483 20 6 1.8628 -5.0611 0.7069 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1255 1.4441 0.0997 26 1 1.7604 1.9266 -0.9357 27 1 1.5975 1.9844 0.8358 28 1 0.3855 -0.5987 2.5165 29 1 1.2945 0.9206 2.3336 30 1 0.5561 1.0615 5.8732 31 1 2.0899 -2.6208 2.0303 32 1 0.7720 -2.3493 0.8652 33 1 0.9042 -3.3373 -1.2344 34 1 2.4560 -3.1853 -2.2191 35 1 0.8168 -4.7729 0.6030 36 1 1.9762 -6.1146 0.4510 37 1 2.1836 -4.9003 1.7361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:59 Heat of formation + Delta-G solvation = 12.282441 kcal Electronic energy + Delta-G solvation = -14719.644046 eV Core-core repulsion = 12497.289638 eV Total energy + Delta-G solvation = -2222.354408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.55532 -36.48910 -32.72273 -30.85959 -28.48988 -27.22364 -26.50998 -24.74178 -22.25780 -21.18775 -19.51011 -18.11635 -16.62051 -15.56981 -14.73437 -14.35909 -14.08014 -13.84558 -13.23666 -12.79673 -12.50838 -12.28867 -12.15204 -11.84205 -11.54187 -11.34055 -11.21157 -11.00022 -10.83664 -10.63665 -10.49141 -10.35400 -10.21618 -9.76086 -9.35302 -9.27506 -9.12199 -8.35682 -7.11132 -5.96669 -3.97004 3.34703 3.40921 3.45810 4.07474 4.47230 4.85242 5.02185 5.21352 5.35083 5.39279 5.53177 5.58456 5.76793 5.87299 5.95953 6.00941 6.04699 6.09013 6.15935 6.23296 6.26791 6.36936 6.46873 6.51351 6.52908 6.57970 6.82274 6.88031 6.93773 7.37220 7.44154 7.89825 8.21538 8.34658 8.65733 9.11209 9.66673 11.13790 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.010056 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.971842 B = 2783.708108 C = 3557.787854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.139 4.139 4 N -0.528 5.528 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.288 1.288 14 C 0.094 3.906 15 C -0.130 4.130 16 H 0.107 0.893 17 C -0.186 4.186 18 C -0.158 4.158 19 H 0.097 0.903 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.059 0.941 28 H -0.011 1.011 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.082 0.918 32 H 0.022 0.978 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -5.790 -10.334 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.033 4.033 3 C -0.196 4.196 4 N -0.252 5.252 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.209 1.209 12 H -0.198 1.198 13 H -0.214 1.214 14 C -0.034 4.034 15 C -0.149 4.149 16 H 0.125 0.875 17 C -0.223 4.223 18 C -0.176 4.176 19 H 0.115 0.885 20 C -0.178 4.178 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.006 0.994 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.535 -5.589 -10.144 11.683 hybrid contribution -0.440 -0.322 0.771 0.944 sum 1.095 -5.911 -9.373 11.136 Atomic orbital electron populations 1.22455 0.98760 1.01121 1.01751 1.21609 0.91923 0.95298 0.94463 1.21794 1.01677 0.95720 1.00440 1.62325 1.58392 1.01865 1.02651 1.19744 0.92355 0.95759 0.85459 1.21222 1.11256 1.30307 0.91268 0.92027 1.24977 0.95368 0.95363 0.98985 1.69958 1.25700 1.34788 1.23639 0.86548 0.80815 0.77835 0.82520 1.20851 1.19807 1.21352 1.21517 0.94924 0.89843 0.97132 1.22515 1.01414 0.93739 0.97227 0.87507 1.23148 0.99130 1.05719 0.94318 1.22316 1.00681 0.93005 1.01640 0.88456 1.21316 0.99009 0.98304 0.99216 0.91729 0.93554 0.93464 0.91432 0.92292 0.93814 0.92233 0.99368 0.94515 0.93069 0.89950 0.95993 0.89371 0.89613 0.92689 0.92893 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.49 37.16 0.32 -2.90 16 2 C 0.08 1.40 2.79 -67.71 -0.19 1.21 16 3 C -0.14 -2.44 9.11 37.16 0.34 -2.11 16 4 N -0.53 -11.38 4.35 -228.08 -0.99 -12.38 16 5 C 0.19 4.96 3.28 -4.97 -0.02 4.95 16 6 C -0.50 -14.19 8.62 -34.44 -0.30 -14.49 16 7 H 0.06 1.74 7.66 -52.49 -0.40 1.34 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.09 1.82 4.05 -3.82 -0.02 1.81 16 15 C -0.13 -2.08 4.67 -90.62 -0.42 -2.51 16 16 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 17 C -0.19 -2.51 9.71 -26.73 -0.26 -2.77 16 18 C -0.16 -2.16 6.41 -90.62 -0.58 -2.74 16 19 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 20 C -0.12 -1.60 9.19 37.16 0.34 -1.25 16 21 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.82 6.71 -51.93 -0.35 0.47 16 24 H 0.07 1.15 6.85 -51.93 -0.36 0.79 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.16 6.59 -51.93 -0.34 0.82 16 28 H -0.01 -0.32 7.34 -51.93 -0.38 -0.70 16 29 H 0.04 1.02 6.02 -51.93 -0.31 0.71 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 32 H 0.02 0.43 6.29 -51.93 -0.33 0.10 16 33 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -29.03 290.30 -8.28 -37.32 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.50 Total: -0.65 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.88 Total: -19.36 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.26 Total: -38.54 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.03 -8.28 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.598 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds