Wall clock time and date at job start Sun Mar 29 2020 21:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 N 1.46906 * 109.47141 * 119.99623 * 2 1 3 5 5 C 1.46901 * 110.99628 * 309.12529 * 4 2 1 6 6 C 1.50701 * 109.46707 * 199.78361 * 5 4 2 7 7 H 1.08001 * 120.00466 * 355.14840 * 6 5 4 8 8 C 1.37876 * 119.99917 * 175.14757 * 6 5 4 9 9 N 1.31517 * 119.99966 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47194 * 269.99908 * 10 8 6 12 12 H 1.48501 * 109.46888 * 29.99892 * 10 8 6 13 13 H 1.48499 * 109.47381 * 149.99576 * 10 8 6 14 14 C 1.46900 * 110.99917 * 73.07690 * 4 2 1 15 15 C 1.53000 * 109.47123 * 66.04475 * 14 4 2 16 16 H 1.09002 * 115.54878 * 29.28563 * 15 14 4 17 17 C 1.52995 * 117.50043 * 243.60811 * 15 14 4 18 18 C 1.52997 * 117.49857 * 174.98141 * 15 14 4 19 19 H 1.09000 * 117.50119 * 214.97813 * 18 15 14 20 20 C 1.53002 * 117.49818 * 0.02562 * 18 15 14 21 21 H 1.09003 * 109.47083 * 300.00601 * 1 2 3 22 22 H 1.09001 * 109.46968 * 60.00360 * 1 2 3 23 23 H 1.08994 * 109.47689 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47043 * 239.99438 * 2 1 3 25 25 H 1.09003 * 109.47231 * 174.43077 * 3 2 1 26 26 H 1.09000 * 109.46721 * 294.42639 * 3 2 1 27 27 H 1.08997 * 109.47567 * 54.42432 * 3 2 1 28 28 H 1.08999 * 109.47082 * 79.78747 * 5 4 2 29 29 H 1.09000 * 109.47596 * 319.78430 * 5 4 2 30 30 H 0.97000 * 119.99893 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47351 * 186.05187 * 14 4 2 32 32 H 1.09000 * 109.47274 * 306.04745 * 14 4 2 33 33 H 1.08999 * 117.50184 * 0.02562 * 17 15 14 34 34 H 1.09001 * 117.49774 * 145.02024 * 17 15 14 35 35 H 1.08993 * 109.47162 * 59.99575 * 20 18 15 36 36 H 1.09007 * 109.46911 * 179.97438 * 20 18 15 37 37 H 1.08999 * 109.46861 * 299.98946 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3792 -0.1633 2.4111 6 6 2.2130 -0.5173 3.6154 7 1 3.0847 -1.1450 3.5032 8 6 1.8632 -0.0397 4.8606 9 7 0.8021 0.7252 4.9972 10 14 2.8971 -0.4777 6.3534 11 1 2.3812 -1.7298 6.9628 12 1 4.3089 -0.6750 5.9371 13 1 2.8234 0.6234 7.3471 14 6 1.8188 -2.1434 1.0887 15 6 2.6982 -2.6957 -0.0350 16 1 3.6233 -2.1496 -0.2194 17 6 1.9940 -3.3202 -1.2411 18 6 2.7213 -4.2126 -0.2333 19 1 3.6617 -4.6647 -0.5483 20 6 1.8628 -5.0611 0.7069 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1255 1.4441 0.0997 26 1 1.7604 1.9266 -0.9357 27 1 1.5975 1.9844 0.8358 28 1 0.3855 -0.5987 2.5165 29 1 1.2945 0.9206 2.3336 30 1 0.5561 1.0615 5.8732 31 1 2.0899 -2.6208 2.0303 32 1 0.7720 -2.3493 0.8652 33 1 0.9042 -3.3373 -1.2344 34 1 2.4560 -3.1853 -2.2191 35 1 0.8168 -4.7729 0.6030 36 1 1.9762 -6.1146 0.4510 37 1 2.1836 -4.9003 1.7361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:59 Heat of formation + Delta-G solvation = -4.738781 kcal Electronic energy + Delta-G solvation = -14720.382141 eV Core-core repulsion = 12497.289638 eV Total energy + Delta-G solvation = -2223.092504 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00044 -37.88736 -34.85761 -32.50135 -29.89628 -28.86208 -27.99708 -26.48652 -24.16279 -22.33279 -20.92889 -19.59988 -18.65226 -17.09392 -16.58788 -15.93982 -15.71943 -15.30812 -14.68557 -14.21385 -14.05665 -13.93297 -13.58815 -13.48694 -12.94633 -12.90872 -12.73679 -12.64766 -12.30519 -12.27694 -12.12378 -12.07007 -11.85912 -11.33203 -11.23376 -10.67180 -10.60338 -10.47534 -8.88605 -8.16942 -6.26447 1.39653 1.40985 1.52763 2.41208 2.91065 3.13316 3.34183 3.88736 4.04617 4.05994 4.10879 4.30222 4.47589 4.53311 4.54393 4.71831 4.78973 4.86431 4.92578 4.94731 4.97726 5.03851 5.06310 5.08242 5.19135 5.22083 5.36440 5.40267 5.46865 5.47604 5.50243 5.70131 6.14448 6.51450 6.76668 6.90535 7.42711 8.92946 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.010056 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.971842 B = 2783.708108 C = 3557.787854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.134 4.134 4 N -0.538 5.538 5 C 0.213 3.787 6 C -0.520 4.520 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.266 1.266 13 H -0.281 1.281 14 C 0.103 3.897 15 C -0.152 4.152 16 H 0.102 0.898 17 C -0.165 4.165 18 C -0.148 4.148 19 H 0.117 0.883 20 C -0.123 4.123 21 H 0.031 0.969 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.030 0.970 28 H -0.042 1.042 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.018 0.982 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -6.876 -11.789 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.035 4.035 3 C -0.192 4.192 4 N -0.261 5.261 5 C 0.087 3.913 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.191 1.191 13 H -0.207 1.207 14 C -0.025 4.025 15 C -0.171 4.171 16 H 0.120 0.880 17 C -0.202 4.202 18 C -0.167 4.167 19 H 0.135 0.865 20 C -0.180 4.180 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.065 0.935 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.049 0.951 28 H -0.024 1.024 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.460 -6.685 -11.620 13.630 hybrid contribution -0.754 0.009 1.171 1.393 sum 1.706 -6.676 -10.449 12.517 Atomic orbital electron populations 1.22360 0.98192 1.01064 1.01662 1.21767 0.92425 0.95635 0.93692 1.21768 1.01108 0.95203 1.01105 1.62255 1.58141 1.03363 1.02391 1.19310 0.90778 0.94043 0.87190 1.21531 1.11351 1.30332 0.92613 0.92533 1.25868 0.96536 0.95103 1.02144 1.70085 1.27248 1.35709 1.24530 0.85457 0.79225 0.77861 0.78541 1.19904 1.19066 1.20681 1.21379 0.95494 0.88337 0.97339 1.22267 1.01199 0.95706 0.97879 0.87957 1.23208 0.99169 1.03479 0.94342 1.22459 1.01617 0.91310 1.01273 0.86478 1.21341 0.98506 0.99854 0.98333 0.95020 0.90322 0.93512 0.88920 0.92722 0.90221 0.95126 1.02442 0.96974 0.92832 0.93025 0.96405 0.89380 0.87243 0.93334 0.90427 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.08 8.49 71.98 0.61 -5.47 16 2 C 0.07 2.64 2.79 44.91 0.13 2.76 16 3 C -0.13 -4.64 9.11 71.98 0.66 -3.99 16 4 N -0.54 -23.65 4.35 -875.52 -3.81 -27.46 16 5 C 0.21 11.55 3.28 85.56 0.28 11.83 16 6 C -0.52 -30.37 8.62 25.60 0.22 -30.15 16 7 H 0.06 3.28 7.66 -2.91 -0.02 3.26 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 10 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 C 0.10 4.03 4.05 86.30 0.35 4.38 16 15 C -0.15 -4.64 4.67 -10.80 -0.05 -4.69 16 16 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 17 C -0.17 -3.94 9.71 30.59 0.30 -3.64 16 18 C -0.15 -3.68 6.41 -10.79 -0.07 -3.75 16 19 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 20 C -0.12 -3.06 9.19 71.98 0.66 -2.39 16 21 H 0.03 1.29 6.66 -2.39 -0.02 1.28 16 22 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.05 1.61 6.71 -2.39 -0.02 1.59 16 24 H 0.09 2.91 6.85 -2.39 -0.02 2.90 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 27 H 0.03 1.21 6.59 -2.39 -0.02 1.20 16 28 H -0.04 -2.48 7.34 -2.39 -0.02 -2.50 16 29 H 0.01 0.72 6.02 -2.39 -0.01 0.70 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.05 2.30 6.95 -2.39 -0.02 2.29 16 32 H 0.02 0.71 6.29 -2.39 -0.02 0.69 16 33 H 0.09 2.14 7.94 -2.39 -0.02 2.12 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.24 7.90 -2.39 -0.02 1.23 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.05 1.33 7.83 -2.39 -0.02 1.31 16 Total: -1.00 -64.08 290.30 3.05 -61.02 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.01 Total: 10.63 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.54 Total: -34.58 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.52 Total: -84.54 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -64.08 3.05 -61.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.285 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds