Wall clock time and date at job start Sun Mar 29 2020 21:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 N 1.46900 * 109.46994 * 239.99570 * 2 1 3 5 5 C 1.46895 * 110.99689 * 68.47057 * 4 2 1 6 6 C 1.50704 * 109.47288 * 281.30418 * 5 4 2 7 7 H 1.08004 * 119.99455 * 0.08559 * 6 5 4 8 8 C 1.37875 * 120.00033 * 180.08423 * 6 5 4 9 9 N 1.31504 * 120.00307 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47068 * 59.99910 * 10 8 6 12 12 H 1.48498 * 109.46840 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47140 * 300.00347 * 10 8 6 14 14 C 1.46906 * 110.99931 * 192.42257 * 4 2 1 15 15 C 1.52998 * 109.46869 * 73.37107 * 14 4 2 16 16 H 1.09001 * 115.55154 * 321.76236 * 15 14 4 17 17 C 1.52998 * 117.49853 * 107.47505 * 15 14 4 18 18 C 1.53004 * 60.00175 * 107.48552 * 17 15 14 19 19 H 1.08996 * 117.51695 * 252.51917 * 18 17 15 20 20 C 1.52998 * 117.49706 * 107.48965 * 18 17 15 21 21 H 1.08998 * 109.47202 * 51.24396 * 1 2 3 22 22 H 1.08995 * 109.47249 * 171.24598 * 1 2 3 23 23 H 1.09008 * 109.47160 * 291.24674 * 1 2 3 24 24 H 1.09009 * 109.46762 * 119.99652 * 2 1 3 25 25 H 1.09006 * 109.47162 * 67.26548 * 3 2 1 26 26 H 1.09002 * 109.46843 * 187.26659 * 3 2 1 27 27 H 1.09000 * 109.46983 * 307.26624 * 3 2 1 28 28 H 1.08997 * 109.47588 * 41.30588 * 5 4 2 29 29 H 1.09004 * 109.46906 * 161.31052 * 5 4 2 30 30 H 0.96999 * 120.00078 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46742 * 193.37244 * 14 4 2 32 32 H 1.09000 * 109.46917 * 313.37293 * 14 4 2 33 33 H 1.08995 * 117.50067 * 214.97416 * 17 15 14 34 34 H 1.09002 * 117.49437 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47411 * 351.37565 * 20 18 17 36 36 H 1.08995 * 109.47011 * 111.38345 * 20 18 17 37 37 H 1.09005 * 109.46888 * 231.37629 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.7206 0.0801 -2.4123 6 6 0.2752 -0.1175 -2.7903 7 1 -0.3583 -0.7525 -2.1886 8 6 -0.2385 0.5123 -3.9041 9 7 0.5329 1.2850 -4.6369 10 14 -2.0304 0.2678 -4.3721 11 1 -2.8999 0.7350 -3.2626 12 1 -2.3319 1.0467 -5.5998 13 1 -2.2834 -1.1733 -4.6260 14 6 3.4579 -0.9730 -1.0951 15 6 3.6846 -2.1107 -0.0974 16 1 3.0389 -2.1015 0.7807 17 6 4.0926 -3.4734 -0.6607 18 6 5.1174 -2.6157 0.0845 19 1 5.8984 -2.1372 -0.5063 20 6 5.5339 -3.0698 1.4849 21 1 -0.3633 0.6433 -0.8014 22 1 -0.3633 -1.0156 -0.1564 23 1 -0.3634 0.3724 0.9579 24 1 1.8933 -0.5138 0.8901 25 1 1.7867 1.9175 0.9479 26 1 3.1223 1.4451 -0.1300 27 1 1.5745 1.9924 -0.8179 28 1 1.9056 1.1377 -2.2243 29 1 2.3591 -0.2612 -3.2272 30 1 0.1716 1.7278 -5.4207 31 1 3.8430 -1.2645 -2.0723 32 1 3.9784 -0.0792 -0.7512 33 1 3.7153 -4.3612 -0.1533 34 1 4.1992 -3.5595 -1.7421 35 1 4.8954 -3.8933 1.8047 36 1 6.5721 -3.4012 1.4655 37 1 5.4310 -2.2383 2.1821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:01 Heat of formation + Delta-G solvation = 19.485888 kcal Electronic energy + Delta-G solvation = -14612.019493 eV Core-core repulsion = 12389.977450 eV Total energy + Delta-G solvation = -2222.042043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.42933 -36.64885 -32.54129 -30.95469 -28.77692 -27.37182 -26.28386 -24.43263 -22.19038 -20.89910 -20.01433 -18.34485 -16.30619 -15.28180 -14.97915 -14.67579 -14.23914 -13.47402 -13.18653 -12.98279 -12.66078 -12.25656 -12.07961 -11.69958 -11.25832 -11.19981 -11.16100 -11.07100 -10.78471 -10.61215 -10.50973 -10.28824 -10.08549 -9.65719 -9.59881 -9.12701 -9.02741 -8.32349 -7.08179 -5.94937 -3.92804 3.36919 3.41139 3.44173 4.03538 4.47696 4.79564 5.11651 5.19987 5.28914 5.39059 5.47079 5.73135 5.80216 5.84581 5.87260 5.96180 6.06302 6.08827 6.15265 6.20909 6.22230 6.38300 6.45746 6.60408 6.64560 6.72799 6.77537 7.00601 7.27859 7.45040 7.52288 7.92986 8.23195 8.33407 8.65823 9.13138 9.68177 11.15485 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039477 B = 0.007687 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.097923 B = 3641.808181 C = 3845.872479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.090 3.910 3 C -0.184 4.184 4 N -0.528 5.528 5 C 0.184 3.816 6 C -0.496 4.496 7 H 0.070 0.930 8 C 0.051 3.949 9 N -0.903 5.903 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.082 3.918 15 C -0.128 4.128 16 H 0.101 0.899 17 C -0.169 4.169 18 C -0.168 4.168 19 H 0.098 0.902 20 C -0.118 4.118 21 H 0.086 0.914 22 H 0.054 0.946 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.022 0.978 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 -4.640 9.699 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 C -0.242 4.242 4 N -0.252 5.252 5 C 0.059 3.941 6 C -0.535 4.535 7 H 0.088 0.912 8 C -0.149 4.149 9 N -0.543 5.543 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.046 4.046 15 C -0.147 4.147 16 H 0.119 0.881 17 C -0.206 4.206 18 C -0.186 4.186 19 H 0.116 0.884 20 C -0.175 4.175 21 H 0.105 0.895 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.025 0.975 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.939 -4.975 9.485 12.247 hybrid contribution -0.481 0.692 -0.376 0.923 sum 5.458 -4.284 9.108 11.450 Atomic orbital electron populations 1.22043 0.94522 1.02793 1.00407 1.21451 0.96204 0.91333 0.92934 1.22461 1.00468 0.99661 1.01631 1.62300 1.11480 1.47815 1.03577 1.19893 0.97065 0.91694 0.85449 1.21324 0.95300 1.27322 1.09517 0.91235 1.24988 0.97755 0.95709 0.96462 1.69946 1.35646 1.31539 1.17160 0.86642 0.85378 0.78168 0.77715 1.20297 1.21540 1.20301 1.21647 0.90948 0.94769 0.97285 1.22401 0.95671 0.95519 1.01062 0.88114 1.23070 1.02851 0.94761 0.99940 1.22380 0.93210 1.05154 0.97893 0.88356 1.21314 1.00750 1.00651 0.94802 0.89529 0.92694 0.95201 0.92538 0.93711 0.93702 0.90899 0.97535 0.96037 0.93078 0.91580 0.95346 0.89452 0.88994 0.92794 0.92666 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.80 37.16 0.29 -2.48 16 2 C 0.09 1.73 2.81 -67.71 -0.19 1.54 16 3 C -0.18 -3.40 8.32 37.16 0.31 -3.09 16 4 N -0.53 -11.35 4.38 -228.08 -1.00 -12.35 16 5 C 0.18 4.72 4.53 -4.98 -0.02 4.70 16 6 C -0.50 -13.64 6.93 -34.44 -0.24 -13.88 16 7 H 0.07 1.89 5.91 -52.48 -0.31 1.58 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 9 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.08 1.52 5.14 -3.82 -0.02 1.50 16 15 C -0.13 -2.00 5.40 -90.62 -0.49 -2.49 16 16 H 0.10 1.60 6.82 -51.93 -0.35 1.24 16 17 C -0.17 -2.41 9.82 -26.73 -0.26 -2.67 16 18 C -0.17 -2.19 6.13 -90.62 -0.56 -2.74 16 19 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 20 C -0.12 -1.28 10.19 37.16 0.38 -0.90 16 21 H 0.09 1.96 5.88 -51.93 -0.31 1.65 16 22 H 0.05 1.11 7.61 -51.93 -0.39 0.71 16 23 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.06 1.00 6.53 -51.92 -0.34 0.66 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.80 6.40 -51.93 -0.33 0.47 16 27 H 0.07 1.55 6.33 -51.93 -0.33 1.22 16 28 H 0.01 0.19 5.37 -51.93 -0.28 -0.09 16 29 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 1.27 7.41 -51.93 -0.38 0.89 16 32 H 0.03 0.52 6.28 -51.93 -0.33 0.19 16 33 H 0.09 1.14 8.05 -51.93 -0.42 0.73 16 34 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -28.52 286.19 -8.11 -36.63 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.24 Total: -0.06 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.90 Total: -19.16 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.26 Total: -38.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.52 -8.11 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.118 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds