Wall clock time and date at job start Sun Mar 29 2020 21:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 N 1.46900 * 109.46994 * 239.99570 * 2 1 3 5 5 C 1.46895 * 110.99689 * 68.47057 * 4 2 1 6 6 C 1.50704 * 109.47288 * 281.30418 * 5 4 2 7 7 H 1.08004 * 119.99455 * 0.08559 * 6 5 4 8 8 C 1.37875 * 120.00033 * 180.08423 * 6 5 4 9 9 N 1.31504 * 120.00307 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47068 * 59.99910 * 10 8 6 12 12 H 1.48498 * 109.46840 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47140 * 300.00347 * 10 8 6 14 14 C 1.46906 * 110.99931 * 192.42257 * 4 2 1 15 15 C 1.52998 * 109.46869 * 73.37107 * 14 4 2 16 16 H 1.09001 * 115.55154 * 321.76236 * 15 14 4 17 17 C 1.52998 * 117.49853 * 107.47505 * 15 14 4 18 18 C 1.53004 * 60.00175 * 107.48552 * 17 15 14 19 19 H 1.08996 * 117.51695 * 252.51917 * 18 17 15 20 20 C 1.52998 * 117.49706 * 107.48965 * 18 17 15 21 21 H 1.08998 * 109.47202 * 51.24396 * 1 2 3 22 22 H 1.08995 * 109.47249 * 171.24598 * 1 2 3 23 23 H 1.09008 * 109.47160 * 291.24674 * 1 2 3 24 24 H 1.09009 * 109.46762 * 119.99652 * 2 1 3 25 25 H 1.09006 * 109.47162 * 67.26548 * 3 2 1 26 26 H 1.09002 * 109.46843 * 187.26659 * 3 2 1 27 27 H 1.09000 * 109.46983 * 307.26624 * 3 2 1 28 28 H 1.08997 * 109.47588 * 41.30588 * 5 4 2 29 29 H 1.09004 * 109.46906 * 161.31052 * 5 4 2 30 30 H 0.96999 * 120.00078 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46742 * 193.37244 * 14 4 2 32 32 H 1.09000 * 109.46917 * 313.37293 * 14 4 2 33 33 H 1.08995 * 117.50067 * 214.97416 * 17 15 14 34 34 H 1.09002 * 117.49437 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47411 * 351.37565 * 20 18 17 36 36 H 1.08995 * 109.47011 * 111.38345 * 20 18 17 37 37 H 1.09005 * 109.46888 * 231.37629 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.7206 0.0801 -2.4123 6 6 0.2752 -0.1175 -2.7903 7 1 -0.3583 -0.7525 -2.1886 8 6 -0.2385 0.5123 -3.9041 9 7 0.5329 1.2850 -4.6369 10 14 -2.0304 0.2678 -4.3721 11 1 -2.8999 0.7350 -3.2626 12 1 -2.3319 1.0467 -5.5998 13 1 -2.2834 -1.1733 -4.6260 14 6 3.4579 -0.9730 -1.0951 15 6 3.6846 -2.1107 -0.0974 16 1 3.0389 -2.1015 0.7807 17 6 4.0926 -3.4734 -0.6607 18 6 5.1174 -2.6157 0.0845 19 1 5.8984 -2.1372 -0.5063 20 6 5.5339 -3.0698 1.4849 21 1 -0.3633 0.6433 -0.8014 22 1 -0.3633 -1.0156 -0.1564 23 1 -0.3634 0.3724 0.9579 24 1 1.8933 -0.5138 0.8901 25 1 1.7867 1.9175 0.9479 26 1 3.1223 1.4451 -0.1300 27 1 1.5745 1.9924 -0.8179 28 1 1.9056 1.1377 -2.2243 29 1 2.3591 -0.2612 -3.2272 30 1 0.1716 1.7278 -5.4207 31 1 3.8430 -1.2645 -2.0723 32 1 3.9784 -0.0792 -0.7512 33 1 3.7153 -4.3612 -0.1533 34 1 4.1992 -3.5595 -1.7421 35 1 4.8954 -3.8933 1.8047 36 1 6.5721 -3.4012 1.4655 37 1 5.4310 -2.2383 2.1821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:01 Heat of formation + Delta-G solvation = 3.031539 kcal Electronic energy + Delta-G solvation = -14612.733007 eV Core-core repulsion = 12389.977450 eV Total energy + Delta-G solvation = -2222.755557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89771 -38.02095 -34.66555 -32.49922 -30.25516 -28.89687 -27.86789 -26.08441 -24.08094 -22.15023 -21.20947 -19.94263 -18.40924 -16.91239 -16.57816 -16.30645 -15.75192 -14.88782 -14.64214 -14.48584 -14.07253 -13.81646 -13.37428 -13.09599 -13.05434 -12.79881 -12.70581 -12.61753 -12.42529 -12.23205 -12.10114 -11.99953 -11.76650 -11.24751 -11.07687 -10.72431 -10.55195 -10.43709 -8.83647 -8.10990 -6.16249 1.42378 1.44898 1.52256 2.44230 2.86453 3.20109 3.40358 3.85259 4.02488 4.09770 4.23007 4.33950 4.47815 4.50149 4.62037 4.70525 4.72115 4.88710 4.98485 5.00389 5.01353 5.06381 5.09464 5.14410 5.23813 5.26839 5.32543 5.38788 5.52235 5.59084 5.74094 5.79846 6.19778 6.53761 6.76087 6.97081 7.49344 8.98917 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039477 B = 0.007687 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.097923 B = 3641.808181 C = 3845.872479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 C -0.174 4.174 4 N -0.536 5.536 5 C 0.199 3.801 6 C -0.501 4.501 7 H 0.071 0.929 8 C -0.003 4.003 9 N -0.940 5.940 10 Si 0.959 3.041 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.272 1.272 14 C 0.085 3.915 15 C -0.143 4.143 16 H 0.104 0.896 17 C -0.173 4.173 18 C -0.146 4.146 19 H 0.100 0.900 20 C -0.116 4.116 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.037 0.963 28 H -0.012 1.012 29 H -0.013 1.013 30 H 0.260 0.740 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -5.586 11.678 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 C -0.233 4.233 4 N -0.260 5.260 5 C 0.073 3.927 6 C -0.539 4.539 7 H 0.089 0.911 8 C -0.200 4.200 9 N -0.582 5.582 10 Si 0.784 3.216 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.044 4.044 15 C -0.162 4.162 16 H 0.122 0.878 17 C -0.210 4.210 18 C -0.165 4.165 19 H 0.118 0.882 20 C -0.173 4.173 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.829 -5.933 11.488 14.183 hybrid contribution -0.385 0.979 -0.954 1.420 sum 5.444 -4.955 10.534 12.851 Atomic orbital electron populations 1.21938 0.94792 1.01597 1.00901 1.21590 0.96034 0.91877 0.92703 1.22343 1.00253 0.98926 1.01776 1.62240 1.13619 1.47200 1.02960 1.19545 0.95747 0.90961 0.86464 1.21612 0.96112 1.26792 1.09409 0.91123 1.25834 1.02144 0.95477 0.96522 1.70083 1.37646 1.32737 1.17734 0.85590 0.80208 0.78212 0.77567 1.19116 1.21328 1.19700 1.21634 0.89067 0.96156 0.97495 1.22242 0.98228 0.95135 1.00560 0.87771 1.23132 1.03523 0.94644 0.99699 1.22483 0.91711 1.03129 0.99148 0.88227 1.21343 1.01861 1.01087 0.93011 0.92916 0.93470 0.91922 0.89747 0.90713 0.93411 0.94388 0.99425 0.99455 0.93123 0.93376 0.95117 0.87989 0.90119 0.92185 0.90999 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 7.80 71.98 0.56 -4.60 16 2 C 0.09 3.23 2.81 44.92 0.13 3.35 16 3 C -0.17 -6.32 8.32 71.98 0.60 -5.72 16 4 N -0.54 -23.23 4.38 -875.50 -3.83 -27.06 16 5 C 0.20 10.61 4.53 85.56 0.39 10.99 16 6 C -0.50 -28.14 6.93 25.60 0.18 -27.97 16 7 H 0.07 3.88 5.91 -2.91 -0.02 3.86 16 8 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 9 N -0.94 -57.33 13.29 21.44 0.28 -57.05 16 10 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.08 3.14 5.14 86.30 0.44 3.58 16 15 C -0.14 -4.25 5.40 -10.79 -0.06 -4.31 16 16 H 0.10 3.04 6.82 -2.39 -0.02 3.02 16 17 C -0.17 -4.66 9.82 30.59 0.30 -4.36 16 18 C -0.15 -3.48 6.13 -10.79 -0.07 -3.54 16 19 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 20 C -0.12 -2.11 10.19 71.98 0.73 -1.38 16 21 H 0.05 2.37 5.88 -2.39 -0.01 2.36 16 22 H 0.05 1.84 7.61 -2.39 -0.02 1.82 16 23 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.08 2.73 6.53 -2.38 -0.02 2.72 16 25 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.05 1.67 6.40 -2.39 -0.02 1.66 16 27 H 0.04 1.63 6.33 -2.39 -0.02 1.62 16 28 H -0.01 -0.67 5.37 -2.39 -0.01 -0.68 16 29 H -0.01 -0.75 7.57 -2.38 -0.02 -0.77 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.05 1.92 7.41 -2.39 -0.02 1.90 16 32 H 0.03 1.11 6.28 -2.39 -0.01 1.10 16 33 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 34 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 35 H 0.06 1.04 7.90 -2.39 -0.02 1.02 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -62.20 286.19 3.17 -59.03 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.02 Total: 11.84 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.67 Total: -33.66 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.55 Total: -84.11 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.20 3.17 -59.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.064 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds