Wall clock time and date at job start Sun Mar 29 2020 21:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47540 * 2 1 4 4 C 1.53007 * 109.46875 * 119.99150 * 2 1 3 5 5 C 1.52999 * 109.47209 * 294.31133 * 4 2 1 6 6 C 1.54891 * 110.75256 * 175.55194 * 5 4 2 7 7 C 1.54265 * 104.31084 * 156.32672 * 6 5 4 8 8 C 1.53880 * 106.59583 * 336.32002 * 7 6 5 9 9 C 1.54257 * 106.59951 * 0.02562 * 8 7 6 10 10 N 1.46894 * 109.47182 * 239.99194 * 2 1 3 11 11 C 1.46897 * 110.99914 * 86.33532 * 10 2 1 12 12 C 1.50704 * 109.47404 * 179.97438 * 11 10 2 13 13 H 1.07999 * 119.99717 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00598 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00330 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99641 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47230 * 90.00298 * 16 14 12 18 18 H 1.48499 * 109.47423 * 209.99941 * 16 14 12 19 19 H 1.48505 * 109.47325 * 330.00206 * 16 14 12 20 20 H 1.08998 * 109.47178 * 300.00703 * 1 2 3 21 21 H 1.09004 * 109.46994 * 60.00166 * 1 2 3 22 22 H 1.08994 * 109.47194 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46978 * 174.30522 * 4 2 1 24 24 H 1.09006 * 109.46798 * 54.31332 * 4 2 1 25 25 H 1.08993 * 110.81529 * 52.21902 * 5 4 2 26 26 H 1.09000 * 110.49152 * 37.58022 * 6 5 4 27 27 H 1.09005 * 110.48617 * 275.06452 * 6 5 4 28 28 H 1.08993 * 110.03587 * 95.61079 * 7 6 5 29 29 H 1.09006 * 110.03191 * 217.03976 * 7 6 5 30 30 H 1.08996 * 110.02970 * 119.29103 * 8 7 6 31 31 H 1.09005 * 110.03241 * 240.71436 * 8 7 6 32 32 H 1.09007 * 110.48513 * 142.28810 * 9 8 7 33 33 H 1.09000 * 110.49131 * 264.79441 * 9 8 7 34 34 H 1.00904 * 111.00313 * 210.28507 * 10 2 1 35 35 H 1.08999 * 109.47012 * 299.99755 * 11 10 2 36 36 H 1.09000 * 109.47560 * 60.00098 * 11 10 2 37 37 H 0.96998 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6500 0.0781 2.4944 6 6 2.0542 -0.6809 3.7827 7 6 2.1801 0.4236 4.8524 8 6 2.4519 1.7370 4.0981 9 6 2.4812 1.3850 2.5965 10 7 2.0196 -0.6926 -1.1993 11 6 2.1125 0.2297 -2.3388 12 6 2.6177 -0.5147 -3.5479 13 1 2.8464 -1.5678 -3.4769 14 6 2.7878 0.1485 -4.7446 15 7 3.2282 -0.5013 -5.7997 16 14 2.3914 1.9698 -4.8675 17 1 3.6033 2.7633 -4.5406 18 1 1.9492 2.2880 -6.2490 19 1 1.3066 2.3060 -3.9107 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1251 -0.8103 1.1999 24 1 1.5958 -1.7152 1.3019 25 1 0.5826 0.2984 2.4947 26 1 3.0092 -1.1875 3.6433 27 1 1.2810 -1.3964 4.0624 28 1 1.2518 0.5031 5.4180 29 1 3.0091 0.2002 5.5240 30 1 1.6556 2.4539 4.2978 31 1 3.4128 2.1511 4.4037 32 1 2.0183 2.1784 2.0096 33 1 3.5052 1.2141 2.2645 34 1 2.9071 -1.1389 -1.0222 35 1 1.1270 0.6438 -2.5523 36 1 2.8018 1.0385 -2.0965 37 1 3.3482 -0.0346 -6.6415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388627994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:05 Heat of formation + Delta-G solvation = -32.791697 kcal Electronic energy + Delta-G solvation = -14181.491173 eV Core-core repulsion = 11957.182203 eV Total energy + Delta-G solvation = -2224.308969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.69538 -36.16910 -32.94313 -31.31475 -28.92406 -28.59229 -26.68413 -24.87902 -21.44126 -20.63079 -20.08535 -19.30967 -16.75603 -15.94520 -15.23833 -14.87335 -14.57521 -13.95118 -13.43851 -13.35524 -12.84396 -12.42402 -12.38057 -11.90553 -11.66856 -11.36301 -11.16758 -11.13674 -11.04815 -10.79875 -10.63483 -10.50463 -10.33947 -10.26352 -9.89925 -9.69234 -9.22033 -8.57670 -7.41360 -6.03662 -4.01084 3.29628 3.37080 3.40516 4.44078 4.51154 4.59801 4.66106 5.06205 5.23726 5.28746 5.31492 5.42435 5.54407 5.58342 5.63953 5.68530 5.71649 5.84893 5.86747 5.97185 6.01402 6.14119 6.20143 6.23039 6.32435 6.34529 6.48664 6.58101 6.74867 6.86840 7.06783 7.67088 7.97443 8.41921 8.69513 9.04839 9.58863 11.09814 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050499 B = 0.005989 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.336749 B = 4673.809491 C = 4855.040297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.034 0.966 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.121 4.121 7 C -0.124 4.124 8 C -0.125 4.125 9 C -0.122 4.122 10 N -0.678 5.678 11 C 0.165 3.835 12 C -0.515 4.515 13 H 0.079 0.921 14 C 0.068 3.932 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.334 0.666 35 H 0.026 0.974 36 H -0.023 1.023 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 3.502 19.324 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.052 0.948 4 C -0.148 4.148 5 C -0.110 4.110 6 C -0.158 4.158 7 C -0.162 4.162 8 C -0.163 4.163 9 C -0.159 4.159 10 N -0.309 5.309 11 C 0.037 3.963 12 C -0.553 4.553 13 H 0.097 0.903 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.192 1.192 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.044 0.956 36 H -0.005 1.005 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.382 3.297 18.945 19.524 hybrid contribution 0.635 1.548 -0.026 1.674 sum -2.746 4.845 18.918 19.721 Atomic orbital electron populations 1.21806 0.95555 1.01781 1.00323 1.21505 0.95654 0.95878 0.90102 0.94788 1.21761 1.00498 0.99304 0.93266 1.22238 0.99963 0.94800 0.93974 1.22420 1.01352 0.97351 0.94716 1.22122 1.01100 0.95100 0.97869 1.22131 1.01182 0.97315 0.95642 1.22504 1.00374 0.97545 0.95513 1.60530 1.33745 1.32809 1.03788 1.20030 0.95536 0.91077 0.89665 1.21095 1.43214 0.98204 0.92788 0.90333 1.24904 0.94783 0.98016 0.95648 1.69900 1.46623 1.36355 1.01189 0.86828 0.79166 0.86091 0.77444 1.20378 1.21152 1.19178 0.93488 0.92952 0.92397 0.92211 0.91322 0.90320 0.91649 0.91900 0.92178 0.92225 0.92170 0.92205 0.91782 0.91631 0.84845 0.95640 1.00493 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.22 37.16 0.34 -1.84 16 2 C 0.08 1.34 2.64 -67.71 -0.18 1.16 16 3 H 0.03 0.61 7.04 -51.93 -0.37 0.24 16 4 C -0.11 -1.52 4.21 -26.73 -0.11 -1.63 16 5 C -0.09 -1.05 2.76 -88.45 -0.24 -1.30 16 6 C -0.12 -1.22 6.26 -25.07 -0.16 -1.37 16 7 C -0.12 -1.13 6.80 -25.61 -0.17 -1.31 16 8 C -0.13 -1.21 6.80 -25.62 -0.17 -1.39 16 9 C -0.12 -1.39 5.65 -24.90 -0.14 -1.53 16 10 N -0.68 -14.37 6.30 -107.99 -0.68 -15.05 16 11 C 0.16 4.12 4.31 -4.98 -0.02 4.10 16 12 C -0.51 -15.06 9.87 -34.44 -0.34 -15.40 16 13 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 16 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 20 H 0.05 0.62 6.46 -51.93 -0.34 0.29 16 21 H 0.05 0.92 7.54 -51.93 -0.39 0.52 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 0.92 6.37 -51.93 -0.33 0.58 16 26 H 0.06 0.66 8.05 -51.93 -0.42 0.25 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.76 7.97 -51.93 -0.41 0.35 16 33 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 34 H 0.33 6.85 8.24 -39.29 -0.32 6.53 16 35 H 0.03 0.66 6.59 -51.93 -0.34 0.32 16 36 H -0.02 -0.56 7.48 -51.93 -0.39 -0.95 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 287.43 15.07 4.33 4.33 Total: -1.00 -30.41 287.43 -8.22 -38.64 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.68 Total: 0.67 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.30 Total: -18.59 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.09 Total: -42.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.41 -8.22 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388627994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.845 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds