Wall clock time and date at job start Sun Mar 29 2020 21:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47540 * 2 1 4 4 C 1.53007 * 109.46875 * 119.99150 * 2 1 3 5 5 C 1.52999 * 109.47209 * 294.31133 * 4 2 1 6 6 C 1.54891 * 110.75256 * 175.55194 * 5 4 2 7 7 C 1.54265 * 104.31084 * 156.32672 * 6 5 4 8 8 C 1.53880 * 106.59583 * 336.32002 * 7 6 5 9 9 C 1.54257 * 106.59951 * 0.02562 * 8 7 6 10 10 N 1.46894 * 109.47182 * 239.99194 * 2 1 3 11 11 C 1.46897 * 110.99914 * 86.33532 * 10 2 1 12 12 C 1.50704 * 109.47404 * 179.97438 * 11 10 2 13 13 H 1.07999 * 119.99717 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00598 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00330 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99641 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47230 * 90.00298 * 16 14 12 18 18 H 1.48499 * 109.47423 * 209.99941 * 16 14 12 19 19 H 1.48505 * 109.47325 * 330.00206 * 16 14 12 20 20 H 1.08998 * 109.47178 * 300.00703 * 1 2 3 21 21 H 1.09004 * 109.46994 * 60.00166 * 1 2 3 22 22 H 1.08994 * 109.47194 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46978 * 174.30522 * 4 2 1 24 24 H 1.09006 * 109.46798 * 54.31332 * 4 2 1 25 25 H 1.08993 * 110.81529 * 52.21902 * 5 4 2 26 26 H 1.09000 * 110.49152 * 37.58022 * 6 5 4 27 27 H 1.09005 * 110.48617 * 275.06452 * 6 5 4 28 28 H 1.08993 * 110.03587 * 95.61079 * 7 6 5 29 29 H 1.09006 * 110.03191 * 217.03976 * 7 6 5 30 30 H 1.08996 * 110.02970 * 119.29103 * 8 7 6 31 31 H 1.09005 * 110.03241 * 240.71436 * 8 7 6 32 32 H 1.09007 * 110.48513 * 142.28810 * 9 8 7 33 33 H 1.09000 * 110.49131 * 264.79441 * 9 8 7 34 34 H 1.00904 * 111.00313 * 210.28507 * 10 2 1 35 35 H 1.08999 * 109.47012 * 299.99755 * 11 10 2 36 36 H 1.09000 * 109.47560 * 60.00098 * 11 10 2 37 37 H 0.96998 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6500 0.0781 2.4944 6 6 2.0542 -0.6809 3.7827 7 6 2.1801 0.4236 4.8524 8 6 2.4519 1.7370 4.0981 9 6 2.4812 1.3850 2.5965 10 7 2.0196 -0.6926 -1.1993 11 6 2.1125 0.2297 -2.3388 12 6 2.6177 -0.5147 -3.5479 13 1 2.8464 -1.5678 -3.4769 14 6 2.7878 0.1485 -4.7446 15 7 3.2282 -0.5013 -5.7997 16 14 2.3914 1.9698 -4.8675 17 1 3.6033 2.7633 -4.5406 18 1 1.9492 2.2880 -6.2490 19 1 1.3066 2.3060 -3.9107 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1251 -0.8103 1.1999 24 1 1.5958 -1.7152 1.3019 25 1 0.5826 0.2984 2.4947 26 1 3.0092 -1.1875 3.6433 27 1 1.2810 -1.3964 4.0624 28 1 1.2518 0.5031 5.4180 29 1 3.0091 0.2002 5.5240 30 1 1.6556 2.4539 4.2978 31 1 3.4128 2.1511 4.4037 32 1 2.0183 2.1784 2.0096 33 1 3.5052 1.2141 2.2645 34 1 2.9071 -1.1389 -1.0222 35 1 1.1270 0.6438 -2.5523 36 1 2.8018 1.0385 -2.0965 37 1 3.3482 -0.0346 -6.6415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388627994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:04 Heat of formation + Delta-G solvation = -51.957985 kcal Electronic energy + Delta-G solvation = -14182.322285 eV Core-core repulsion = 11957.182203 eV Total energy + Delta-G solvation = -2225.140082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69440 -37.57699 -34.96097 -32.95374 -30.11538 -29.47758 -28.49726 -26.09119 -23.30215 -21.86213 -20.97337 -20.42518 -18.90651 -16.98016 -16.55044 -16.51980 -15.83612 -15.41824 -15.05642 -14.46382 -14.23426 -13.96662 -13.88413 -13.44767 -13.07201 -12.79140 -12.50831 -12.23193 -12.14741 -12.00734 -11.89546 -11.80715 -11.49061 -11.44258 -11.25349 -11.20822 -11.08861 -10.83232 -9.13332 -8.32064 -6.36404 1.31888 1.34230 1.45723 2.32094 3.01765 3.41240 3.69027 3.82126 3.90425 4.16661 4.21434 4.51080 4.59996 4.62181 4.66019 4.70841 4.76894 4.81627 4.90454 4.94717 4.99822 5.01436 5.08731 5.15835 5.17057 5.28725 5.30569 5.35987 5.42910 5.54194 5.56235 5.63367 5.99479 6.58250 6.66872 6.78426 7.28933 8.84858 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050499 B = 0.005989 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.336749 B = 4673.809491 C = 4855.040297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.077 3.923 3 H 0.030 0.970 4 C -0.101 4.101 5 C -0.088 4.088 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.125 4.125 10 N -0.688 5.688 11 C 0.178 3.822 12 C -0.529 4.529 13 H 0.037 0.963 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.253 1.253 20 H 0.077 0.923 21 H 0.032 0.968 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.335 0.665 35 H 0.022 0.978 36 H -0.019 1.019 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 5.052 21.278 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.033 4.033 3 H 0.048 0.952 4 C -0.139 4.139 5 C -0.107 4.107 6 C -0.157 4.157 7 C -0.160 4.160 8 C -0.161 4.161 9 C -0.163 4.163 10 N -0.319 5.319 11 C 0.049 3.951 12 C -0.568 4.568 13 H 0.055 0.945 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.177 1.177 20 H 0.096 0.904 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.040 0.960 36 H -0.001 1.001 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.119 4.837 20.926 21.869 hybrid contribution 0.886 0.961 -0.627 1.450 sum -3.233 5.799 20.299 21.357 Atomic orbital electron populations 1.21791 0.94539 1.01882 1.00897 1.21647 0.96384 0.95642 0.89621 0.95173 1.21669 1.00184 0.99303 0.92739 1.22201 1.00178 0.94776 0.93498 1.22409 1.01467 0.97707 0.94099 1.22122 1.02017 0.94188 0.97627 1.22127 1.01821 0.97880 0.94246 1.22518 0.99676 0.97264 0.96851 1.60462 1.33918 1.32729 1.04761 1.19748 0.94815 0.91094 0.89452 1.21368 1.43552 0.96841 0.94994 0.94459 1.25869 0.94381 1.03587 0.95024 1.70047 1.47867 1.38789 1.02024 0.85673 0.79701 0.79285 0.78016 1.19039 1.20343 1.17686 0.90422 0.94850 0.92537 0.92506 0.91242 0.89862 0.91942 0.91049 0.91165 0.91393 0.91460 0.91704 0.92438 0.92585 0.84765 0.95986 1.00133 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.22 71.98 0.66 -3.37 16 2 C 0.08 2.52 2.64 44.92 0.12 2.64 16 3 H 0.03 1.03 7.04 -2.38 -0.02 1.01 16 4 C -0.10 -2.63 4.21 30.60 0.13 -2.50 16 5 C -0.09 -1.83 2.76 -9.39 -0.03 -1.86 16 6 C -0.12 -2.10 6.26 31.67 0.20 -1.90 16 7 C -0.12 -1.87 6.80 31.32 0.21 -1.65 16 8 C -0.12 -2.07 6.80 31.32 0.21 -1.85 16 9 C -0.13 -2.63 5.65 31.78 0.18 -2.45 16 10 N -0.69 -29.13 6.30 -495.58 -3.12 -32.25 16 11 C 0.18 8.85 4.31 85.56 0.37 9.22 16 12 C -0.53 -31.68 9.87 25.60 0.25 -31.43 16 13 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 14 C 0.01 0.53 5.47 84.65 0.46 1.00 16 15 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 16 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 20 H 0.08 1.85 6.46 -2.39 -0.02 1.84 16 21 H 0.03 1.12 7.54 -2.39 -0.02 1.10 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.06 1.51 7.88 -2.39 -0.02 1.49 16 24 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.08 1.68 6.37 -2.39 -0.02 1.67 16 26 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 27 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.26 7.97 -2.38 -0.02 1.24 16 33 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 34 H 0.33 13.91 8.24 -89.69 -0.74 13.17 16 35 H 0.02 1.12 6.59 -2.39 -0.02 1.10 16 36 H -0.02 -0.92 7.48 -2.39 -0.02 -0.94 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -65.52 287.43 2.05 -63.47 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.22 Total: 15.87 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.77 Total: -34.16 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -2.82 Total: -92.18 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -65.52 2.05 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388627994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.509 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds