Wall clock time and date at job start Sun Mar 29 2020 21:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47404 * 2 1 4 4 C 1.52998 * 109.47417 * 239.99174 * 2 1 3 5 5 C 1.52998 * 109.46693 * 64.94745 * 4 2 1 6 6 C 1.54269 * 110.48788 * 185.34176 * 5 4 2 7 7 C 1.53872 * 106.64218 * 217.73328 * 6 5 4 8 8 C 1.54268 * 106.59801 * 359.97438 * 7 6 5 9 9 C 1.54891 * 104.19688 * 23.60872 * 8 7 6 10 10 N 1.46905 * 109.46890 * 119.99214 * 2 1 3 11 11 C 1.46894 * 111.00459 * 273.88618 * 10 2 1 12 12 C 1.50699 * 109.47473 * 179.97438 * 11 10 2 13 13 H 1.08006 * 119.99612 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00289 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00090 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00122 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46944 * 89.99834 * 16 14 12 18 18 H 1.48494 * 109.47076 * 209.99986 * 16 14 12 19 19 H 1.48497 * 109.46863 * 330.00007 * 16 14 12 20 20 H 1.09002 * 109.46968 * 60.00512 * 1 2 3 21 21 H 1.08997 * 109.47597 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47210 * 300.00984 * 1 2 3 23 23 H 1.08995 * 109.47464 * 304.94867 * 4 2 1 24 24 H 1.08998 * 109.47118 * 184.94392 * 4 2 1 25 25 H 1.09004 * 110.53853 * 307.95674 * 5 4 2 26 26 H 1.09005 * 110.02820 * 98.42221 * 6 5 4 27 27 H 1.09000 * 110.02991 * 337.04647 * 6 5 4 28 28 H 1.08998 * 110.02831 * 119.26081 * 7 6 5 29 29 H 1.09004 * 110.03410 * 240.69012 * 7 6 5 30 30 H 1.08995 * 110.48093 * 142.28752 * 8 7 6 31 31 H 1.09003 * 110.48257 * 264.79813 * 8 7 6 32 32 H 1.09004 * 110.75305 * 80.36927 * 9 8 7 33 33 H 1.08993 * 110.75298 * 203.55650 * 9 8 7 34 34 H 1.00902 * 110.99796 * 149.92651 * 10 2 1 35 35 H 1.08997 * 109.47343 * 299.99873 * 11 10 2 36 36 H 1.09003 * 109.46884 * 60.00235 * 11 10 2 37 37 H 0.96991 * 120.00375 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6341 0.0680 -2.4953 6 6 2.0197 -0.7051 -3.7734 7 6 2.4955 0.3423 -4.7953 8 6 2.3822 1.7164 -4.1032 9 6 2.4430 1.3863 -2.5911 10 7 2.0196 -0.6924 1.1996 11 6 2.1074 0.2290 2.3403 12 6 2.6115 -0.5155 3.5497 13 1 2.8430 -1.5680 3.4782 14 6 2.7761 0.1467 4.7478 15 7 2.4928 1.4280 4.8353 16 14 3.4003 -0.7763 6.2471 17 1 4.8830 -0.7064 6.2895 18 1 2.8403 -0.1597 7.4765 19 1 2.9737 -2.1964 6.1671 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.6062 -1.7203 -1.2945 24 1 3.1264 -0.7987 -1.2059 25 1 0.5644 0.2771 -2.4839 26 1 1.1528 -1.2393 -4.1624 27 1 2.8243 -1.4076 -3.5564 28 1 3.5314 0.1486 -5.0735 29 1 1.8596 0.3165 -5.6802 30 1 3.2171 2.3567 -4.3877 31 1 1.4344 2.1928 -4.3539 32 1 3.4732 1.2306 -2.2708 33 1 1.9726 2.1752 -2.0043 34 1 2.9087 -1.1358 1.0235 35 1 2.7947 1.0402 2.1001 36 1 1.1203 0.6398 2.5524 37 1 2.6082 1.8938 5.6781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388628000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:06 Heat of formation + Delta-G solvation = -36.870127 kcal Electronic energy + Delta-G solvation = -14132.790580 eV Core-core repulsion = 11908.304757 eV Total energy + Delta-G solvation = -2224.485823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.64705 -36.00096 -32.96956 -31.08584 -28.79284 -28.42696 -26.26087 -24.76466 -21.75106 -20.73536 -19.82408 -19.26848 -16.44660 -15.75874 -15.13853 -14.68128 -14.58465 -14.11826 -13.33327 -13.07351 -12.85863 -12.22873 -12.17033 -11.53941 -11.45102 -11.25961 -11.09522 -11.05428 -10.91663 -10.69662 -10.64476 -10.53185 -10.39254 -10.13130 -10.03807 -9.64519 -9.08828 -8.44619 -7.20670 -5.99641 -4.01318 3.33820 3.39674 3.44625 4.45456 4.59752 4.67249 4.73463 5.19244 5.33948 5.36136 5.41860 5.46618 5.63542 5.66388 5.71852 5.77498 5.80798 5.91992 5.96085 6.07216 6.09835 6.23535 6.29430 6.30542 6.42348 6.45112 6.59468 6.71658 6.88798 7.34814 7.48664 7.84230 8.19423 8.49021 8.69688 9.08697 9.63520 11.11550 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059458 B = 0.005364 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.808494 B = 5218.689944 C = 5267.577445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.035 0.965 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.121 4.121 7 C -0.124 4.124 8 C -0.125 4.125 9 C -0.121 4.121 10 N -0.688 5.688 11 C 0.195 3.805 12 C -0.513 4.513 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.327 0.673 35 H -0.016 1.016 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -1.217 -16.624 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 H 0.053 0.947 4 C -0.148 4.148 5 C -0.110 4.110 6 C -0.159 4.159 7 C -0.162 4.162 8 C -0.163 4.163 9 C -0.159 4.159 10 N -0.319 5.319 11 C 0.068 3.932 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.002 0.998 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.505 -1.304 -16.308 16.429 hybrid contribution 1.112 0.191 0.688 1.321 sum -0.394 -1.113 -15.620 15.665 Atomic orbital electron populations 1.21792 0.95713 1.01476 1.00357 1.21454 0.95511 0.95949 0.89990 0.94737 1.21805 1.00270 0.99231 0.93499 1.22062 1.00114 0.94862 0.93940 1.22211 1.00729 0.97793 0.95139 1.22127 1.00832 0.95128 0.98094 1.22357 1.01311 0.96759 0.95874 1.22598 1.00449 0.97362 0.95452 1.60707 1.33001 1.33909 1.04276 1.19573 0.96259 0.90170 0.87196 1.21221 1.43244 0.96282 0.94433 0.92027 1.24991 0.95736 0.94894 0.98981 1.69963 1.49104 1.08644 1.26142 0.86495 0.78803 0.79992 0.82105 1.20758 1.21259 1.19777 0.93643 0.92712 0.92785 0.91595 0.92398 0.90479 0.92185 0.91845 0.92192 0.92321 0.92083 0.91905 0.91537 0.91538 0.85638 0.99799 0.95450 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.20 37.16 0.34 -1.97 16 2 C 0.08 1.47 2.64 -67.71 -0.18 1.29 16 3 H 0.03 0.67 7.01 -51.93 -0.36 0.31 16 4 C -0.11 -1.60 4.06 -26.73 -0.11 -1.71 16 5 C -0.09 -1.12 2.73 -88.92 -0.24 -1.36 16 6 C -0.12 -1.29 6.37 -25.61 -0.16 -1.45 16 7 C -0.12 -1.20 6.80 -25.61 -0.17 -1.38 16 8 C -0.13 -1.28 6.83 -25.07 -0.17 -1.45 16 9 C -0.12 -1.48 5.66 -24.70 -0.14 -1.62 16 10 N -0.69 -15.21 6.30 -107.99 -0.68 -15.89 16 11 C 0.19 5.25 5.24 -4.98 -0.03 5.23 16 12 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 13 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H 0.04 0.65 6.43 -51.93 -0.33 0.32 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.05 1.03 7.53 -51.93 -0.39 0.63 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 25 H 0.08 0.96 6.31 -51.93 -0.33 0.63 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 33 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 34 H 0.33 6.91 8.26 -39.29 -0.32 6.59 16 35 H -0.02 -0.45 8.05 -51.93 -0.42 -0.87 16 36 H 0.03 0.80 7.51 -51.93 -0.39 0.41 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -29.96 290.62 -8.56 -38.52 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.70 Total: 0.73 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.28 Total: -18.13 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.06 Total: -42.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.96 -8.56 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388628000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.654 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds