Wall clock time and date at job start Sun Mar 29 2020 21:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47404 * 2 1 4 4 C 1.52998 * 109.47417 * 239.99174 * 2 1 3 5 5 C 1.52998 * 109.46693 * 64.94745 * 4 2 1 6 6 C 1.54269 * 110.48788 * 185.34176 * 5 4 2 7 7 C 1.53872 * 106.64218 * 217.73328 * 6 5 4 8 8 C 1.54268 * 106.59801 * 359.97438 * 7 6 5 9 9 C 1.54891 * 104.19688 * 23.60872 * 8 7 6 10 10 N 1.46905 * 109.46890 * 119.99214 * 2 1 3 11 11 C 1.46894 * 111.00459 * 273.88618 * 10 2 1 12 12 C 1.50699 * 109.47473 * 179.97438 * 11 10 2 13 13 H 1.08006 * 119.99612 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00289 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00090 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00122 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46944 * 89.99834 * 16 14 12 18 18 H 1.48494 * 109.47076 * 209.99986 * 16 14 12 19 19 H 1.48497 * 109.46863 * 330.00007 * 16 14 12 20 20 H 1.09002 * 109.46968 * 60.00512 * 1 2 3 21 21 H 1.08997 * 109.47597 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47210 * 300.00984 * 1 2 3 23 23 H 1.08995 * 109.47464 * 304.94867 * 4 2 1 24 24 H 1.08998 * 109.47118 * 184.94392 * 4 2 1 25 25 H 1.09004 * 110.53853 * 307.95674 * 5 4 2 26 26 H 1.09005 * 110.02820 * 98.42221 * 6 5 4 27 27 H 1.09000 * 110.02991 * 337.04647 * 6 5 4 28 28 H 1.08998 * 110.02831 * 119.26081 * 7 6 5 29 29 H 1.09004 * 110.03410 * 240.69012 * 7 6 5 30 30 H 1.08995 * 110.48093 * 142.28752 * 8 7 6 31 31 H 1.09003 * 110.48257 * 264.79813 * 8 7 6 32 32 H 1.09004 * 110.75305 * 80.36927 * 9 8 7 33 33 H 1.08993 * 110.75298 * 203.55650 * 9 8 7 34 34 H 1.00902 * 110.99796 * 149.92651 * 10 2 1 35 35 H 1.08997 * 109.47343 * 299.99873 * 11 10 2 36 36 H 1.09003 * 109.46884 * 60.00235 * 11 10 2 37 37 H 0.96991 * 120.00375 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6341 0.0680 -2.4953 6 6 2.0197 -0.7051 -3.7734 7 6 2.4955 0.3423 -4.7953 8 6 2.3822 1.7164 -4.1032 9 6 2.4430 1.3863 -2.5911 10 7 2.0196 -0.6924 1.1996 11 6 2.1074 0.2290 2.3403 12 6 2.6115 -0.5155 3.5497 13 1 2.8430 -1.5680 3.4782 14 6 2.7761 0.1467 4.7478 15 7 2.4928 1.4280 4.8353 16 14 3.4003 -0.7763 6.2471 17 1 4.8830 -0.7064 6.2895 18 1 2.8403 -0.1597 7.4765 19 1 2.9737 -2.1964 6.1671 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.6062 -1.7203 -1.2945 24 1 3.1264 -0.7987 -1.2059 25 1 0.5644 0.2771 -2.4839 26 1 1.1528 -1.2393 -4.1624 27 1 2.8243 -1.4076 -3.5564 28 1 3.5314 0.1486 -5.0735 29 1 1.8596 0.3165 -5.6802 30 1 3.2171 2.3567 -4.3877 31 1 1.4344 2.1928 -4.3539 32 1 3.4732 1.2306 -2.2708 33 1 1.9726 2.1752 -2.0043 34 1 2.9087 -1.1358 1.0235 35 1 2.7947 1.0402 2.1001 36 1 1.1203 0.6398 2.5524 37 1 2.6082 1.8938 5.6781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388628000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:06 Heat of formation + Delta-G solvation = -55.026943 kcal Electronic energy + Delta-G solvation = -14133.577919 eV Core-core repulsion = 11908.304757 eV Total energy + Delta-G solvation = -2225.273162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.72367 -37.52392 -35.00674 -32.72812 -29.98893 -29.46460 -28.18804 -26.12900 -23.69995 -21.92668 -20.88778 -20.44532 -18.55068 -16.93695 -16.67455 -16.40496 -15.87218 -15.48031 -14.79481 -14.41370 -14.19813 -13.84196 -13.73167 -13.34118 -13.01407 -12.77773 -12.54162 -12.26518 -12.16762 -12.11132 -11.98513 -11.85732 -11.47434 -11.37318 -11.33573 -11.16310 -11.01237 -10.66562 -9.10191 -8.23215 -6.34982 1.40309 1.42521 1.54448 2.39637 3.09784 3.47127 3.71344 3.80767 3.92669 4.16811 4.22302 4.52467 4.59500 4.64139 4.65163 4.70688 4.79030 4.90843 4.93412 4.97513 5.02022 5.10778 5.14155 5.18093 5.23644 5.29826 5.33586 5.35430 5.47316 5.54321 5.61061 5.63842 6.03864 6.48811 6.75082 6.90899 7.36420 8.88607 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059458 B = 0.005364 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.808494 B = 5218.689944 C = 5267.577445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.078 3.922 3 H 0.018 0.982 4 C -0.098 4.098 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.127 4.127 10 N -0.687 5.687 11 C 0.212 3.788 12 C -0.537 4.537 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.264 1.264 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.025 0.975 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.333 0.667 35 H -0.045 1.045 36 H -0.002 1.002 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 -2.404 -17.613 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.032 4.032 3 H 0.036 0.964 4 C -0.136 4.136 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.159 4.159 8 C -0.160 4.160 9 C -0.164 4.164 10 N -0.318 5.318 11 C 0.084 3.916 12 C -0.576 4.576 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.188 1.188 20 H 0.094 0.906 21 H 0.078 0.922 22 H 0.044 0.956 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.150 0.850 35 H -0.027 1.027 36 H 0.016 0.984 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.304 -2.501 -17.325 17.553 hybrid contribution 1.027 0.601 0.960 1.529 sum -0.277 -1.900 -16.365 16.477 Atomic orbital electron populations 1.21755 0.94708 1.01832 1.00489 1.21594 0.96274 0.95234 0.90071 0.96443 1.21699 1.00062 0.99330 0.92543 1.22034 1.00189 0.94776 0.93702 1.22191 1.01263 0.97891 0.94250 1.22127 1.01516 0.94099 0.98193 1.22348 1.02021 0.97499 0.94090 1.22610 0.99669 0.97101 0.97036 1.60622 1.33283 1.33115 1.04764 1.19192 0.93587 0.89972 0.88885 1.21579 1.43849 0.96606 0.95527 0.91737 1.25990 0.95555 0.95776 1.02456 1.70098 1.49802 1.10408 1.27273 0.85296 0.78524 0.78717 0.77539 1.19576 1.20634 1.18823 0.90570 0.92159 0.95608 0.90931 0.92529 0.90185 0.91000 0.91878 0.91684 0.90837 0.91429 0.91218 0.92573 0.92854 0.84998 1.02713 0.98407 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.20 71.98 0.66 -3.76 16 2 C 0.08 2.86 2.64 44.91 0.12 2.98 16 3 H 0.02 0.71 7.01 -2.38 -0.02 0.69 16 4 C -0.10 -2.76 4.06 30.59 0.12 -2.64 16 5 C -0.09 -2.03 2.73 -9.69 -0.03 -2.05 16 6 C -0.12 -2.21 6.37 31.32 0.20 -2.01 16 7 C -0.12 -2.02 6.80 31.32 0.21 -1.81 16 8 C -0.12 -2.26 6.83 31.67 0.22 -2.04 16 9 C -0.13 -3.00 5.66 31.91 0.18 -2.81 16 10 N -0.69 -30.93 6.30 -495.59 -3.12 -34.06 16 11 C 0.21 11.87 5.24 85.56 0.45 12.31 16 12 C -0.54 -31.68 9.32 25.60 0.24 -31.44 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 14 C 0.00 0.01 5.46 84.65 0.46 0.48 16 15 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.98 45.10 29.54 68.60 2.03 47.13 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 H 0.08 2.09 6.43 -2.39 -0.02 2.08 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 22 H 0.02 0.99 7.53 -2.39 -0.02 0.97 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.60 7.89 -2.39 -0.02 1.58 16 25 H 0.08 1.81 6.31 -2.38 -0.02 1.79 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.43 7.96 -2.39 -0.02 1.41 16 33 H 0.05 1.38 7.96 -2.39 -0.02 1.36 16 34 H 0.33 14.20 8.26 -89.69 -0.74 13.45 16 35 H -0.04 -2.71 8.05 -2.39 -0.02 -2.73 16 36 H 0.00 -0.13 7.51 -2.39 -0.02 -0.15 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -64.70 290.62 2.30 -62.40 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.27 Total: 14.99 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 2.84 Total: -32.79 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -2.84 Total: -91.73 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.70 2.30 -62.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388628000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.374 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds