Wall clock time and date at job start Sun Mar 29 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.53786 * 113.61490 * 272.49638 * 5 4 2 7 7 C 1.53788 * 87.08139 * 220.02391 * 6 5 4 8 8 C 1.53779 * 87.07834 * 25.43337 * 7 6 5 9 9 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 10 10 C 1.46901 * 110.99793 * 85.00144 * 9 2 1 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 2 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99711 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00219 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46794 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.47140 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.46982 * 330.00118 * 16 14 12 20 20 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 21 21 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 22 22 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 24 24 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 25 25 H 1.08993 * 112.85274 * 43.80463 * 5 4 2 26 26 H 1.08996 * 113.61624 * 334.57120 * 6 5 4 27 27 H 1.08999 * 113.60910 * 105.47590 * 6 5 4 28 28 H 1.08997 * 113.61065 * 270.88753 * 7 6 5 29 29 H 1.08994 * 113.61450 * 139.98787 * 7 6 5 30 30 H 1.09011 * 113.61327 * 220.01980 * 8 7 6 31 31 H 1.09001 * 113.69154 * 89.13142 * 8 7 6 32 32 H 1.00898 * 110.99995 * 208.95221 * 9 2 1 33 33 H 1.09002 * 109.47401 * 59.99808 * 10 9 2 34 34 H 1.09001 * 109.46874 * 299.99821 * 10 9 2 35 35 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 37 37 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.2943 -1.7316 0.5507 7 6 5.2973 -1.7646 1.7160 8 6 4.1703 -1.2025 2.5985 9 7 2.0196 -0.6925 -1.1995 10 6 2.0824 0.2226 -2.3469 11 6 2.5949 -0.5333 -3.5745 12 6 2.6599 0.4057 -4.7515 13 1 2.3648 1.4381 -4.6356 14 6 3.0962 -0.0533 -5.9762 15 7 3.1525 0.7659 -7.0035 16 14 3.6074 -1.8389 -6.1765 17 1 2.4279 -2.6500 -6.5712 18 1 4.6518 -1.9399 -7.2273 19 1 4.1488 -2.3459 -4.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 3.9286 0.3868 1.0782 26 1 3.7095 -2.6461 0.4520 27 1 4.7313 -1.4035 -0.3924 28 1 6.1358 -1.0798 1.5898 29 1 5.6097 -2.7709 1.9949 30 1 4.5073 -0.4472 3.3087 31 1 3.5510 -1.9714 3.0604 32 1 2.9172 -1.1205 -1.0288 33 1 2.7588 1.0462 -2.1183 34 1 1.0870 0.6163 -2.5525 35 1 3.5902 -0.9273 -3.3692 36 1 1.9182 -1.3566 -3.8030 37 1 3.4598 0.4431 -7.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388655301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:02 Heat of formation + Delta-G solvation = -6.085943 kcal Electronic energy + Delta-G solvation = -14236.667046 eV Core-core repulsion = 12013.516125 eV Total energy + Delta-G solvation = -2223.150921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32481 -36.45438 -33.39853 -31.65197 -28.72476 -28.16981 -25.69152 -24.05578 -22.98748 -20.42596 -20.01340 -19.29053 -16.73572 -16.10669 -15.22173 -14.71853 -14.67305 -14.14481 -13.42587 -12.99159 -12.66422 -12.51362 -12.46738 -12.14034 -11.96215 -11.66297 -11.28542 -11.19256 -11.14200 -10.76296 -10.56290 -10.19511 -10.06219 -9.88672 -9.72821 -9.60822 -9.18330 -8.50865 -7.82716 -6.01766 -3.99705 3.34782 3.41285 3.46487 4.48693 4.48828 4.59462 4.65015 4.76985 4.82633 5.22579 5.29645 5.32957 5.52737 5.66593 5.68060 5.72609 5.74732 5.85533 5.88843 6.01374 6.03810 6.08413 6.22346 6.26206 6.33859 6.36439 6.49555 6.55069 6.85476 7.21772 7.44142 7.69854 7.84183 8.03783 8.56844 9.02664 9.60950 11.11684 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.007133 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.691483 B = 3924.476874 C = 4489.436742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.143 4.143 7 C -0.142 4.142 8 C -0.136 4.136 9 N -0.695 5.695 10 C 0.073 3.927 11 C -0.010 4.010 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.905 5.905 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.338 0.662 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.011 0.989 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -4.562 18.408 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.148 4.148 5 C -0.134 4.134 6 C -0.181 4.181 7 C -0.180 4.180 8 C -0.173 4.173 9 N -0.329 5.329 10 C -0.055 4.055 11 C -0.048 4.048 12 C -0.558 4.558 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.190 1.190 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.012 -4.796 18.051 18.677 hybrid contribution 1.059 -0.257 -0.121 1.097 sum 1.048 -5.053 17.930 18.657 Atomic orbital electron populations 1.21778 0.95113 1.01942 1.00826 1.21508 0.95605 0.95805 0.89960 0.94438 1.21773 0.94164 1.01481 0.97429 1.22619 0.95150 0.98867 0.96802 1.23061 0.98052 0.99213 0.97730 1.22805 0.96919 1.01089 0.97169 1.22920 0.97886 1.00223 0.96277 1.60739 1.33737 1.34189 1.04243 1.21977 0.99977 0.93393 0.90187 1.19544 0.95649 0.96547 0.93027 1.21091 1.44099 0.97732 0.92920 0.91144 1.25010 0.95061 0.97602 0.95776 1.69919 1.47908 1.35362 1.01205 0.86739 0.78631 0.85695 0.77992 1.20238 1.21512 1.18978 0.93352 0.92559 0.92323 0.91638 0.91111 0.89530 0.89566 0.91117 0.90383 0.91678 0.91904 0.90243 0.84090 0.96267 0.91865 0.97039 0.96142 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.41 37.16 0.35 -1.54 16 2 C 0.08 1.18 2.64 -67.71 -0.18 1.00 16 3 H 0.04 0.57 7.80 -51.93 -0.40 0.17 16 4 C -0.11 -1.30 4.73 -26.73 -0.13 -1.43 16 5 C -0.12 -1.32 3.42 -89.80 -0.31 -1.63 16 6 C -0.14 -1.69 5.63 -25.91 -0.15 -1.84 16 7 C -0.14 -1.43 8.08 -25.92 -0.21 -1.64 16 8 C -0.14 -1.31 7.64 -25.92 -0.20 -1.50 16 9 N -0.69 -12.24 6.31 -106.72 -0.67 -12.91 16 10 C 0.07 1.54 5.42 -3.82 -0.02 1.52 16 11 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 12 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 16 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.84 7.45 -51.93 -0.39 0.45 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 25 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 26 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 27 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.34 5.68 4.96 -39.29 -0.20 5.48 16 33 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 34 H 0.06 1.36 7.44 -51.93 -0.39 0.97 16 35 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 36 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -30.53 290.03 -8.32 -38.84 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.73 Total: 0.80 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.39 Total: -21.10 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.10 Total: -40.53 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.53 -8.32 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388655301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.758 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds