Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.53786 * 113.61490 * 272.49638 * 5 4 2 7 7 C 1.53788 * 87.08139 * 220.02391 * 6 5 4 8 8 C 1.53779 * 87.07834 * 25.43337 * 7 6 5 9 9 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 10 10 C 1.46901 * 110.99793 * 85.00144 * 9 2 1 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 2 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99711 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00219 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46794 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.47140 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.46982 * 330.00118 * 16 14 12 20 20 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 21 21 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 22 22 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 24 24 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 25 25 H 1.08993 * 112.85274 * 43.80463 * 5 4 2 26 26 H 1.08996 * 113.61624 * 334.57120 * 6 5 4 27 27 H 1.08999 * 113.60910 * 105.47590 * 6 5 4 28 28 H 1.08997 * 113.61065 * 270.88753 * 7 6 5 29 29 H 1.08994 * 113.61450 * 139.98787 * 7 6 5 30 30 H 1.09011 * 113.61327 * 220.01980 * 8 7 6 31 31 H 1.09001 * 113.69154 * 89.13142 * 8 7 6 32 32 H 1.00898 * 110.99995 * 208.95221 * 9 2 1 33 33 H 1.09002 * 109.47401 * 59.99808 * 10 9 2 34 34 H 1.09001 * 109.46874 * 299.99821 * 10 9 2 35 35 H 1.09001 * 109.47194 * 299.99524 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 37 37 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.2943 -1.7316 0.5507 7 6 5.2973 -1.7646 1.7160 8 6 4.1703 -1.2025 2.5985 9 7 2.0196 -0.6925 -1.1995 10 6 2.0824 0.2226 -2.3469 11 6 2.5949 -0.5333 -3.5745 12 6 2.6599 0.4057 -4.7515 13 1 2.3648 1.4381 -4.6356 14 6 3.0962 -0.0533 -5.9762 15 7 3.1525 0.7659 -7.0035 16 14 3.6074 -1.8389 -6.1765 17 1 2.4279 -2.6500 -6.5712 18 1 4.6518 -1.9399 -7.2273 19 1 4.1488 -2.3459 -4.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 3.9286 0.3868 1.0782 26 1 3.7095 -2.6461 0.4520 27 1 4.7313 -1.4035 -0.3924 28 1 6.1358 -1.0798 1.5898 29 1 5.6097 -2.7709 1.9949 30 1 4.5073 -0.4472 3.3087 31 1 3.5510 -1.9714 3.0604 32 1 2.9172 -1.1205 -1.0288 33 1 2.7588 1.0462 -2.1183 34 1 1.0870 0.6163 -2.5525 35 1 3.5902 -0.9273 -3.3692 36 1 1.9182 -1.3566 -3.8030 37 1 3.4598 0.4431 -7.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388655301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = -24.872141 kcal Electronic energy + Delta-G solvation = -14237.481677 eV Core-core repulsion = 12013.516125 eV Total energy + Delta-G solvation = -2223.965552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26729 -37.76367 -35.35782 -33.46953 -30.40516 -29.22744 -26.63266 -25.80415 -24.03831 -22.25532 -21.24246 -20.17542 -18.95408 -17.28355 -16.35146 -16.24508 -16.03511 -15.63698 -15.05267 -14.64196 -14.14166 -13.85506 -13.51173 -13.28366 -13.07285 -13.01118 -12.87728 -12.71347 -12.27150 -12.17067 -11.83623 -11.61679 -11.47854 -11.43720 -11.39357 -11.00149 -10.78868 -10.76950 -9.28857 -8.31857 -6.36660 1.35704 1.36927 1.49870 2.35205 3.03467 3.33124 3.63288 3.75381 3.82633 4.00247 4.18446 4.28345 4.44751 4.52485 4.54980 4.67567 4.81612 4.89173 4.90100 4.92974 4.94169 4.96987 5.04717 5.08814 5.16452 5.24126 5.32368 5.40970 5.44952 5.48687 5.61466 5.65140 6.20399 6.26596 6.60619 6.72935 7.28308 8.84945 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.007133 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.691483 B = 3924.476874 C = 4489.436742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 H 0.029 0.971 4 C -0.101 4.101 5 C -0.121 4.121 6 C -0.152 4.152 7 C -0.139 4.139 8 C -0.124 4.124 9 N -0.694 5.694 10 C 0.086 3.914 11 C -0.003 4.003 12 C -0.535 4.535 13 H 0.031 0.969 14 C 0.006 3.994 15 N -0.950 5.950 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.248 1.248 20 H 0.074 0.926 21 H 0.035 0.965 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.344 0.656 33 H 0.010 0.990 34 H 0.053 0.947 35 H 0.016 0.984 36 H 0.021 0.979 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -6.484 20.431 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.047 0.953 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.190 4.190 7 C -0.176 4.176 8 C -0.161 4.161 9 N -0.329 5.329 10 C -0.043 4.043 11 C -0.041 4.041 12 C -0.574 4.574 13 H 0.049 0.951 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.171 1.171 20 H 0.093 0.907 21 H 0.055 0.945 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.204 -6.714 20.102 21.195 hybrid contribution 0.959 0.445 -0.750 1.296 sum 1.163 -6.269 19.353 20.376 Atomic orbital electron populations 1.21771 0.94290 1.02161 1.01193 1.21669 0.96255 0.95534 0.89876 0.95254 1.21712 0.94333 1.01348 0.96486 1.22629 0.94955 0.98227 0.98158 1.23110 0.98973 0.99411 0.97481 1.22801 0.96782 1.01837 0.96227 1.22875 0.97281 1.00453 0.95489 1.60694 1.34155 1.33527 1.04535 1.21647 0.98906 0.93244 0.90480 1.19426 0.96013 0.95792 0.92848 1.21404 1.44021 0.96938 0.95021 0.95111 1.26006 0.94924 1.02932 0.95219 1.70065 1.49056 1.37951 1.01992 0.85603 0.78687 0.79199 0.78817 1.19149 1.20692 1.17121 0.90694 0.94545 0.92127 0.89521 0.90793 0.90644 0.89426 0.93159 0.90395 0.90591 0.90904 0.89064 0.83485 0.97171 0.92806 0.96519 0.96038 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.41 71.98 0.68 -2.81 16 2 C 0.08 2.10 2.64 44.91 0.12 2.22 16 3 H 0.03 0.87 7.80 -2.39 -0.02 0.85 16 4 C -0.10 -2.12 4.73 30.59 0.14 -1.97 16 5 C -0.12 -2.53 3.42 -10.26 -0.04 -2.56 16 6 C -0.15 -3.37 5.63 31.12 0.18 -3.20 16 7 C -0.14 -2.48 8.08 31.12 0.25 -2.23 16 8 C -0.12 -2.01 7.64 31.12 0.24 -1.77 16 9 N -0.69 -23.83 6.31 -491.55 -3.10 -26.93 16 10 C 0.09 3.68 5.42 86.30 0.47 4.15 16 11 C 0.00 -0.15 4.30 29.85 0.13 -0.02 16 12 C -0.54 -32.15 9.66 25.60 0.25 -31.90 16 13 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 14 C 0.01 0.37 5.47 84.66 0.46 0.83 16 15 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 16 Si 0.95 45.58 27.47 68.60 1.88 47.47 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 20 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 21 H 0.04 1.06 7.45 -2.39 -0.02 1.04 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 25 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 26 H 0.09 1.90 7.90 -2.39 -0.02 1.88 16 27 H 0.05 1.30 7.54 -2.39 -0.02 1.28 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.34 11.18 4.96 -89.70 -0.45 10.73 16 33 H 0.01 0.44 8.06 -2.39 -0.02 0.42 16 34 H 0.05 2.37 7.44 -2.39 -0.02 2.35 16 35 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 36 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 37 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -65.96 290.03 2.47 -63.50 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.51 Total: 15.79 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 2.88 Total: -39.26 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.80 Total: -87.50 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.47 kcal Total: -65.96 2.47 -63.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388655301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.626 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds