Wall clock time and date at job start Sun Mar 29 2020 21:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.53004 * 109.46879 * 240.00142 * 2 1 3 5 5 C 1.52999 * 109.47507 * 175.00132 * 4 2 1 6 6 C 1.53783 * 113.61609 * 272.50263 * 5 4 2 7 7 C 1.53778 * 87.08218 * 220.01507 * 6 5 4 8 8 C 1.53778 * 113.61891 * 175.00158 * 5 4 2 9 9 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 10 10 C 1.46898 * 110.99673 * 274.99797 * 9 2 1 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 2 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 22 22 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 23 23 H 1.09007 * 109.47129 * 295.00444 * 4 2 1 24 24 H 1.08998 * 109.47493 * 54.99950 * 4 2 1 25 25 H 1.09009 * 112.84728 * 43.80119 * 5 4 2 26 26 H 1.09006 * 113.61105 * 334.56511 * 6 5 4 27 27 H 1.09000 * 113.61914 * 105.46077 * 6 5 4 28 28 H 1.08999 * 113.61283 * 270.88619 * 7 6 5 29 29 H 1.08995 * 113.61785 * 139.97376 * 7 6 5 30 30 H 1.09007 * 113.61179 * 254.52944 * 8 5 4 31 31 H 1.08997 * 113.61296 * 25.34630 * 8 5 4 32 32 H 1.00895 * 111.00497 * 151.03719 * 9 2 1 33 33 H 1.09001 * 109.47062 * 59.99745 * 10 9 2 34 34 H 1.08993 * 109.47084 * 299.99192 * 10 9 2 35 35 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 36 36 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 37 37 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3139 6 6 4.0631 0.6564 -2.0240 7 6 5.1480 -0.2237 -2.6668 8 6 4.1904 -1.4109 -2.4703 9 7 2.0198 -0.6926 1.1994 10 6 2.0826 0.2224 2.3468 11 6 2.5953 -0.5334 3.5744 12 6 2.6604 0.4054 4.7514 13 1 2.3651 1.4379 4.6356 14 6 3.0957 -0.0539 5.9763 15 7 3.4547 -1.3112 6.1175 16 14 3.1757 1.1097 7.4355 17 1 1.8198 1.6469 7.7151 18 1 3.6722 0.3758 8.6272 19 1 4.0980 2.2312 7.1243 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.7515 -1.7715 -1.2057 24 1 1.6054 -0.2618 -2.1370 25 1 4.0430 -0.7928 -0.3508 26 1 3.3501 1.0640 -2.7408 27 1 4.4588 1.4105 -1.3437 28 1 6.0598 -0.2955 -2.0740 29 1 5.3397 0.0139 -3.7132 30 1 4.6892 -2.3258 -2.1502 31 1 3.5119 -1.5697 -3.3084 32 1 2.9173 -1.1207 1.0286 33 1 1.0872 0.6162 2.5525 34 1 2.7591 1.0459 2.1182 35 1 1.9185 -1.3568 3.8029 36 1 3.5906 -0.9275 3.3689 37 1 3.7614 -1.6342 6.9791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388655306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:03 Heat of formation + Delta-G solvation = -9.121988 kcal Electronic energy + Delta-G solvation = -14039.904486 eV Core-core repulsion = 11816.621912 eV Total energy + Delta-G solvation = -2223.282574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.19226 -36.46844 -33.37551 -31.45301 -28.35698 -27.97493 -25.63190 -24.12528 -22.98397 -20.48605 -20.01251 -19.30337 -16.29181 -15.78866 -15.40291 -14.85376 -14.53364 -14.24924 -13.30392 -12.95853 -12.59267 -12.48536 -12.19624 -12.04839 -11.90452 -11.43294 -11.28698 -11.03267 -10.96345 -10.75315 -10.54788 -10.42666 -10.12773 -9.89420 -9.83996 -9.28981 -9.11106 -8.31998 -7.71455 -5.96683 -3.99161 3.35288 3.39418 3.41969 4.45882 4.56099 4.63243 4.70633 4.80291 4.90798 5.30935 5.36517 5.39048 5.48476 5.63574 5.67827 5.76760 5.84545 5.88483 5.92246 5.97405 6.13541 6.18948 6.23810 6.36948 6.43587 6.48882 6.53111 6.62606 7.05659 7.58425 7.78736 7.88904 8.05353 8.14661 8.47980 9.08055 9.64357 11.14781 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037493 B = 0.005806 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.626541 B = 4821.154046 C = 5164.988468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.136 4.136 9 N -0.688 5.688 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.335 0.665 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 1.809 -16.630 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.176 4.176 7 C -0.181 4.181 8 C -0.174 4.174 9 N -0.321 5.321 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.560 4.560 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.847 1.435 -16.329 16.413 hybrid contribution 0.870 1.165 0.707 1.617 sum 0.023 2.601 -15.621 15.836 Atomic orbital electron populations 1.21769 0.95239 1.01939 1.00627 1.21467 0.95475 0.95848 0.90084 0.94545 1.21746 0.94084 1.01418 0.97430 1.22621 0.95852 0.96532 0.98320 1.22977 0.98325 0.96713 0.99544 1.22806 0.97506 0.97186 1.00586 1.22921 0.98507 0.97358 0.98604 1.60675 1.33180 1.34127 1.04090 1.22174 0.99415 0.93516 0.91071 1.19063 0.96143 0.95785 0.90213 1.21154 1.43934 0.96302 0.94639 0.92870 1.24999 0.95439 0.95085 0.98808 1.69967 1.44499 1.14340 1.24516 0.86654 0.78405 0.80895 0.82005 1.20230 1.21265 1.20318 0.92289 0.92693 0.93487 0.91095 0.91843 0.89050 0.90360 0.91717 0.90282 0.91871 0.91576 0.90360 0.84594 0.92470 0.96890 0.95701 0.96949 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.42 37.16 0.35 -1.60 16 2 C 0.08 1.22 2.65 -67.71 -0.18 1.04 16 3 H 0.04 0.57 7.80 -51.93 -0.40 0.17 16 4 C -0.11 -1.34 4.64 -26.73 -0.12 -1.47 16 5 C -0.11 -1.37 3.48 -89.81 -0.31 -1.68 16 6 C -0.14 -1.51 7.63 -25.92 -0.20 -1.71 16 7 C -0.14 -1.43 8.08 -25.92 -0.21 -1.64 16 8 C -0.14 -1.40 7.64 -25.92 -0.20 -1.60 16 9 N -0.69 -12.68 6.31 -106.72 -0.67 -13.35 16 10 C 0.07 1.45 5.42 -3.82 -0.02 1.43 16 11 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.05 0.84 7.45 -51.93 -0.39 0.46 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.69 7.84 -51.93 -0.41 0.29 16 25 H 0.09 1.25 6.41 -51.92 -0.33 0.91 16 26 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.33 6.00 6.46 -39.29 -0.25 5.75 16 33 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 34 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -29.93 296.01 -8.71 -38.65 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.77 Total: 0.44 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.45 Total: -20.53 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.06 Total: -39.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.93 -8.71 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388655306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.524 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds