Wall clock time and date at job start Sun Mar 29 2020 21:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.53004 * 109.46879 * 240.00142 * 2 1 3 5 5 C 1.52999 * 109.47507 * 175.00132 * 4 2 1 6 6 C 1.53783 * 113.61609 * 272.50263 * 5 4 2 7 7 C 1.53778 * 87.08218 * 220.01507 * 6 5 4 8 8 C 1.53778 * 113.61891 * 175.00158 * 5 4 2 9 9 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 10 10 C 1.46898 * 110.99673 * 274.99797 * 9 2 1 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 2 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 22 22 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 23 23 H 1.09007 * 109.47129 * 295.00444 * 4 2 1 24 24 H 1.08998 * 109.47493 * 54.99950 * 4 2 1 25 25 H 1.09009 * 112.84728 * 43.80119 * 5 4 2 26 26 H 1.09006 * 113.61105 * 334.56511 * 6 5 4 27 27 H 1.09000 * 113.61914 * 105.46077 * 6 5 4 28 28 H 1.08999 * 113.61283 * 270.88619 * 7 6 5 29 29 H 1.08995 * 113.61785 * 139.97376 * 7 6 5 30 30 H 1.09007 * 113.61179 * 254.52944 * 8 5 4 31 31 H 1.08997 * 113.61296 * 25.34630 * 8 5 4 32 32 H 1.00895 * 111.00497 * 151.03719 * 9 2 1 33 33 H 1.09001 * 109.47062 * 59.99745 * 10 9 2 34 34 H 1.08993 * 109.47084 * 299.99192 * 10 9 2 35 35 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 36 36 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 37 37 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3139 6 6 4.0631 0.6564 -2.0240 7 6 5.1480 -0.2237 -2.6668 8 6 4.1904 -1.4109 -2.4703 9 7 2.0198 -0.6926 1.1994 10 6 2.0826 0.2224 2.3468 11 6 2.5953 -0.5334 3.5744 12 6 2.6604 0.4054 4.7514 13 1 2.3651 1.4379 4.6356 14 6 3.0957 -0.0539 5.9763 15 7 3.4547 -1.3112 6.1175 16 14 3.1757 1.1097 7.4355 17 1 1.8198 1.6469 7.7151 18 1 3.6722 0.3758 8.6272 19 1 4.0980 2.2312 7.1243 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.7515 -1.7715 -1.2057 24 1 1.6054 -0.2618 -2.1370 25 1 4.0430 -0.7928 -0.3508 26 1 3.3501 1.0640 -2.7408 27 1 4.4588 1.4105 -1.3437 28 1 6.0598 -0.2955 -2.0740 29 1 5.3397 0.0139 -3.7132 30 1 4.6892 -2.3258 -2.1502 31 1 3.5119 -1.5697 -3.3084 32 1 2.9173 -1.1207 1.0286 33 1 1.0872 0.6162 2.5525 34 1 2.7591 1.0459 2.1182 35 1 1.9185 -1.3568 3.8029 36 1 3.5906 -0.9275 3.3689 37 1 3.7614 -1.6342 6.9791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388655306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:03 Heat of formation + Delta-G solvation = -26.782380 kcal Electronic energy + Delta-G solvation = -14040.670298 eV Core-core repulsion = 11816.621912 eV Total energy + Delta-G solvation = -2224.048386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15354 -37.83829 -35.39270 -33.21376 -29.94384 -29.26380 -26.46717 -26.06893 -24.06483 -22.41040 -21.21949 -20.20377 -18.49897 -17.01344 -16.63869 -16.47268 -15.83068 -15.67777 -14.92355 -14.43717 -13.88929 -13.87854 -13.51798 -13.27863 -13.01731 -12.86155 -12.77963 -12.69873 -12.46319 -12.25477 -12.07369 -11.64527 -11.45252 -11.32748 -11.20368 -10.97704 -10.80258 -10.57053 -9.24746 -8.21163 -6.33238 1.39291 1.42978 1.50992 2.39932 3.11905 3.37239 3.67642 3.78777 3.82186 3.99475 4.23082 4.30104 4.44530 4.53375 4.59095 4.68493 4.84795 4.88807 4.90323 4.94363 4.98803 5.04515 5.08069 5.08407 5.18002 5.26708 5.42222 5.45233 5.47132 5.64456 5.66746 5.79056 6.16047 6.33483 6.59697 6.83741 7.36108 8.90939 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037493 B = 0.005806 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.626541 B = 4821.154046 C = 5164.988468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.099 4.099 5 C -0.125 4.125 6 C -0.137 4.137 7 C -0.140 4.140 8 C -0.130 4.130 9 N -0.693 5.693 10 C 0.086 3.914 11 C 0.033 3.967 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.266 1.266 20 H 0.056 0.944 21 H 0.037 0.963 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.336 0.664 33 H 0.055 0.945 34 H 0.013 0.987 35 H -0.007 1.007 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 2.919 -17.735 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 H 0.051 0.949 4 C -0.136 4.136 5 C -0.143 4.143 6 C -0.175 4.175 7 C -0.177 4.177 8 C -0.167 4.167 9 N -0.327 5.327 10 C -0.043 4.043 11 C -0.005 4.005 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.075 0.925 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.155 0.845 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.012 0.988 36 H 0.007 0.993 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.167 2.549 -17.456 17.680 hybrid contribution 0.963 0.780 1.015 1.602 sum -0.203 3.329 -16.441 16.776 Atomic orbital electron populations 1.21765 0.94330 1.01977 1.01257 1.21607 0.96121 0.95645 0.89691 0.94929 1.21681 0.94250 1.01017 0.96684 1.22615 0.95604 0.98112 0.97987 1.23006 0.98948 0.96012 0.99507 1.22792 0.96980 0.96573 1.01399 1.22916 0.98553 0.97154 0.98106 1.60626 1.33409 1.33842 1.04780 1.21771 0.98760 0.93185 0.90549 1.18914 0.94219 0.95054 0.92295 1.21583 1.44298 0.96915 0.95770 0.92272 1.25989 0.94647 0.96886 1.02147 1.70106 1.45104 1.16431 1.25530 0.85460 0.78978 0.78598 0.77754 1.19127 1.20629 1.19120 0.92535 0.94422 0.90509 0.91366 0.89433 0.91473 0.88889 0.92990 0.90853 0.90196 0.91821 0.88785 0.84457 0.92660 0.96879 0.98824 0.99258 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.42 71.98 0.68 -2.94 16 2 C 0.08 2.29 2.65 44.92 0.12 2.40 16 3 H 0.03 0.99 7.80 -2.39 -0.02 0.97 16 4 C -0.10 -2.24 4.64 30.60 0.14 -2.10 16 5 C -0.12 -2.84 3.48 -10.27 -0.04 -2.88 16 6 C -0.14 -2.78 7.63 31.12 0.24 -2.54 16 7 C -0.14 -2.53 8.08 31.12 0.25 -2.28 16 8 C -0.13 -2.42 7.64 31.12 0.24 -2.18 16 9 N -0.69 -25.85 6.31 -491.55 -3.10 -28.95 16 10 C 0.09 3.84 5.42 86.31 0.47 4.31 16 11 C 0.03 1.81 5.23 29.85 0.16 1.97 16 12 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 16 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.04 1.12 7.45 -2.39 -0.02 1.10 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.09 1.61 7.84 -2.39 -0.02 1.59 16 25 H 0.07 1.86 6.41 -2.38 -0.02 1.84 16 26 H 0.09 1.61 7.90 -2.38 -0.02 1.59 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.34 12.37 6.46 -89.70 -0.58 11.79 16 33 H 0.05 2.47 7.44 -2.39 -0.02 2.45 16 34 H 0.01 0.58 8.05 -2.39 -0.02 0.56 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -64.50 296.01 2.59 -61.91 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.43 Total: 15.46 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 2.95 Total: -37.69 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.82 Total: -86.72 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.50 2.59 -61.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388655306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.131 kcal (2) G-P(sol) polarization free energy of solvation -64.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds