Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 H 1.07994 * 120.00692 * 119.99605 * 4 2 1 6 6 C 1.37884 * 119.99565 * 300.00147 * 4 2 1 7 7 N 1.31517 * 120.00039 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47216 * 59.99545 * 8 6 4 10 10 H 1.48492 * 109.47327 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47102 * 300.00212 * 8 6 4 12 12 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 13 13 C 1.46901 * 110.99788 * 183.95405 * 12 2 1 14 14 C 1.46901 * 110.99790 * 60.00351 * 12 2 1 15 15 C 1.53000 * 109.46769 * 190.00085 * 14 12 2 16 16 C 1.53000 * 112.85338 * 48.80161 * 15 14 12 17 17 C 1.53784 * 113.61014 * 277.49201 * 15 14 12 18 18 C 1.53780 * 87.08085 * 220.01889 * 17 15 14 19 19 C 1.53780 * 87.08071 * 25.43718 * 18 17 15 20 20 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 21 21 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 23 23 H 0.96998 * 119.99780 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.47121 * 296.04690 * 13 12 2 25 25 H 1.09005 * 109.47342 * 56.04784 * 13 12 2 26 26 H 1.08999 * 109.46894 * 176.04703 * 13 12 2 27 27 H 1.09002 * 109.47401 * 69.99793 * 14 12 2 28 28 H 1.09001 * 109.46874 * 309.99805 * 14 12 2 29 29 H 1.08999 * 109.47127 * 69.66498 * 16 15 14 30 30 H 1.09003 * 109.47202 * 189.66624 * 16 15 14 31 31 H 1.09003 * 109.47064 * 309.66574 * 16 15 14 32 32 H 1.08998 * 113.62094 * 334.56858 * 17 15 14 33 33 H 1.09000 * 113.60922 * 105.47491 * 17 15 14 34 34 H 1.08999 * 113.61781 * 270.88707 * 18 17 15 35 35 H 1.09003 * 113.61217 * 139.98268 * 18 17 15 36 36 H 1.09005 * 113.61564 * 220.01497 * 19 18 17 37 37 H 1.08998 * 113.61983 * 89.11462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0083 10 1 1.8268 -0.4199 5.2204 11 1 1.8257 -2.5202 4.0077 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8628 -0.9043 -3.6341 16 6 1.4264 -2.3584 -3.4441 17 6 3.3049 -0.7539 -4.1465 18 6 2.7231 -0.8208 -5.5685 19 6 1.4079 -0.2942 -4.9704 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7094 1.1618 3.4843 24 1 3.9193 0.2044 -1.2299 25 1 3.8070 -1.2915 -0.2718 26 1 3.8165 -1.3721 -2.0499 27 1 2.0520 0.9346 -2.5280 28 1 0.4723 0.1324 -2.3564 29 1 0.3379 -2.4146 -3.4481 30 1 1.8247 -2.9664 -4.2564 31 1 1.8059 -2.7302 -2.4923 32 1 3.7563 0.2082 -3.9043 33 1 3.9471 -1.5986 -3.8974 34 1 2.6487 -1.8344 -5.9625 35 1 3.1939 -0.1279 -6.2659 36 1 0.5186 -0.7678 -5.3864 37 1 1.3406 0.7935 -4.9534 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388780841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = 19.344769 kcal Electronic energy + Delta-G solvation = -14927.005367 eV Core-core repulsion = 12704.957204 eV Total energy + Delta-G solvation = -2222.048162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.50284 -36.23996 -32.66994 -29.63963 -28.83106 -26.96634 -25.43734 -24.72279 -23.68980 -21.50599 -19.18355 -17.91697 -16.24450 -15.31745 -15.15559 -14.62281 -14.09656 -13.62773 -13.13647 -12.74468 -12.52270 -12.07079 -11.91634 -11.74860 -11.35779 -11.08306 -11.02005 -10.90152 -10.74968 -10.50480 -10.20414 -10.16900 -10.04746 -9.95484 -9.63580 -9.27498 -8.78379 -8.37459 -7.04834 -5.96993 -4.01170 3.34178 3.38381 3.41334 4.43617 4.80678 4.89387 4.95418 5.07009 5.31257 5.39011 5.68417 5.81873 5.86866 5.94325 6.05468 6.10866 6.19125 6.25340 6.31711 6.38300 6.48299 6.50796 6.64325 6.71712 6.89108 6.93933 6.96699 7.12053 7.24092 7.59670 7.81245 7.87708 8.29332 8.40171 8.69391 9.05859 9.63572 11.09875 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055885 B = 0.007690 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.907789 B = 3640.073503 C = 3825.713413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.531 5.531 13 C 0.032 3.968 14 C 0.065 3.935 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.131 4.131 18 C -0.142 4.142 19 C -0.135 4.135 20 H 0.008 0.992 21 H 0.033 0.967 22 H 0.083 0.917 23 H 0.260 0.740 24 H 0.005 0.995 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -2.618 -11.984 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.012 0.988 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.256 5.256 13 C -0.116 4.116 14 C -0.063 4.063 15 C -0.074 4.074 16 C -0.173 4.173 17 C -0.169 4.169 18 C -0.180 4.180 19 C -0.173 4.173 20 H 0.026 0.974 21 H 0.053 0.947 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.024 0.976 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.782 -2.971 -11.811 12.309 hybrid contribution 0.621 0.537 0.885 1.207 sum 2.404 -2.434 -10.926 11.449 Atomic orbital electron populations 1.21842 0.97877 0.99555 0.99730 1.19220 0.92225 0.91897 0.86150 0.98755 1.21143 1.30874 1.12194 0.89843 0.91935 1.24939 0.95275 0.95102 0.98988 1.69889 1.37042 1.23073 1.23411 0.86599 0.79040 0.79776 0.82194 1.20407 1.21401 1.20239 1.62095 1.09044 1.52396 1.02029 1.22365 0.89100 0.98609 1.01559 1.22066 1.00493 0.93616 0.90144 1.21815 0.95413 0.96700 0.93460 1.21424 1.00567 0.93269 1.02036 1.23095 0.96760 1.01602 0.95418 1.22815 0.97592 1.00803 0.96753 1.22995 0.97152 1.00293 0.96846 0.97353 0.94733 0.89815 0.93007 0.97628 0.90988 0.93017 0.96394 0.90968 0.93123 0.94172 0.90326 0.90681 0.91569 0.90582 0.92239 0.91857 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.76 37.16 0.33 -2.97 16 2 C 0.21 5.44 2.06 -68.86 -0.14 5.30 16 3 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 4 C -0.50 -13.92 7.88 -34.44 -0.27 -14.19 16 5 H 0.06 1.72 6.41 -52.49 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.55 3.53 -236.28 -0.83 -12.38 16 13 C 0.03 0.65 8.62 60.07 0.52 1.17 16 14 C 0.07 1.23 4.37 -3.82 -0.02 1.21 16 15 C -0.07 -1.12 0.79 -153.69 -0.12 -1.24 16 16 C -0.12 -1.75 8.92 37.16 0.33 -1.42 16 17 C -0.13 -1.81 5.21 -25.92 -0.14 -1.94 16 18 C -0.14 -1.68 7.73 -25.92 -0.20 -1.88 16 19 C -0.13 -1.75 7.23 -25.92 -0.19 -1.94 16 20 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.07 1.56 6.10 -51.93 -0.32 1.24 16 26 H 0.05 0.90 5.03 -51.93 -0.26 0.64 16 27 H 0.02 0.35 7.92 -51.93 -0.41 -0.07 16 28 H 0.07 1.40 5.83 -51.93 -0.30 1.10 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.52 7.34 -51.93 -0.38 0.14 16 31 H 0.08 1.36 7.23 -51.93 -0.38 0.98 16 32 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 33 H 0.07 0.90 7.13 -51.93 -0.37 0.53 16 34 H 0.08 0.84 7.64 -51.93 -0.40 0.44 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 278.68 15.07 4.20 4.20 Total: -1.00 -28.17 278.68 -7.31 -35.49 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.29 Total: -2.20 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 0.01 Total: -16.38 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.21 Total: -37.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.17 -7.31 -35.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388780841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.833 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds