Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 H 1.07994 * 120.00692 * 119.99605 * 4 2 1 6 6 C 1.37884 * 119.99565 * 300.00147 * 4 2 1 7 7 N 1.31517 * 120.00039 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47216 * 59.99545 * 8 6 4 10 10 H 1.48492 * 109.47327 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47102 * 300.00212 * 8 6 4 12 12 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 13 13 C 1.46901 * 110.99788 * 183.95405 * 12 2 1 14 14 C 1.46901 * 110.99790 * 60.00351 * 12 2 1 15 15 C 1.53000 * 109.46769 * 190.00085 * 14 12 2 16 16 C 1.53000 * 112.85338 * 48.80161 * 15 14 12 17 17 C 1.53784 * 113.61014 * 277.49201 * 15 14 12 18 18 C 1.53780 * 87.08085 * 220.01889 * 17 15 14 19 19 C 1.53780 * 87.08071 * 25.43718 * 18 17 15 20 20 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 21 21 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 23 23 H 0.96998 * 119.99780 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.47121 * 296.04690 * 13 12 2 25 25 H 1.09005 * 109.47342 * 56.04784 * 13 12 2 26 26 H 1.08999 * 109.46894 * 176.04703 * 13 12 2 27 27 H 1.09002 * 109.47401 * 69.99793 * 14 12 2 28 28 H 1.09001 * 109.46874 * 309.99805 * 14 12 2 29 29 H 1.08999 * 109.47127 * 69.66498 * 16 15 14 30 30 H 1.09003 * 109.47202 * 189.66624 * 16 15 14 31 31 H 1.09003 * 109.47064 * 309.66574 * 16 15 14 32 32 H 1.08998 * 113.62094 * 334.56858 * 17 15 14 33 33 H 1.09000 * 113.60922 * 105.47491 * 17 15 14 34 34 H 1.08999 * 113.61781 * 270.88707 * 18 17 15 35 35 H 1.09003 * 113.61217 * 139.98268 * 18 17 15 36 36 H 1.09005 * 113.61564 * 220.01497 * 19 18 17 37 37 H 1.08998 * 113.61983 * 89.11462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0083 10 1 1.8268 -0.4199 5.2204 11 1 1.8257 -2.5202 4.0077 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5488 -0.0263 -2.4211 15 6 1.8628 -0.9043 -3.6341 16 6 1.4264 -2.3584 -3.4441 17 6 3.3049 -0.7539 -4.1465 18 6 2.7231 -0.8208 -5.5685 19 6 1.4079 -0.2942 -4.9704 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7094 1.1618 3.4843 24 1 3.9193 0.2044 -1.2299 25 1 3.8070 -1.2915 -0.2718 26 1 3.8165 -1.3721 -2.0499 27 1 2.0520 0.9346 -2.5280 28 1 0.4723 0.1324 -2.3564 29 1 0.3379 -2.4146 -3.4481 30 1 1.8247 -2.9664 -4.2564 31 1 1.8059 -2.7302 -2.4923 32 1 3.7563 0.2082 -3.9043 33 1 3.9471 -1.5986 -3.8974 34 1 2.6487 -1.8344 -5.9625 35 1 3.1939 -0.1279 -6.2659 36 1 0.5186 -0.7678 -5.3864 37 1 1.3406 0.7935 -4.9534 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388780841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = 3.574153 kcal Electronic energy + Delta-G solvation = -14927.689232 eV Core-core repulsion = 12704.957204 eV Total energy + Delta-G solvation = -2222.732028 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74230 -37.96478 -34.69188 -31.36158 -30.38698 -28.51686 -26.86637 -26.37496 -25.26492 -22.97748 -20.98698 -19.12885 -18.27954 -17.11638 -16.36516 -16.07425 -15.95093 -15.14559 -14.72518 -14.29642 -14.22240 -13.69793 -13.20705 -12.97909 -12.91912 -12.74132 -12.72965 -12.54019 -12.49059 -12.08197 -11.99632 -11.94862 -11.77574 -11.27125 -10.99648 -10.74404 -10.60166 -10.48920 -8.86675 -8.10953 -6.22952 1.41902 1.43956 1.51526 2.42317 3.16749 3.39914 3.74455 3.82904 3.99803 4.05220 4.37691 4.59713 4.66961 4.69584 4.75898 4.84321 4.88542 4.97136 4.99894 5.04888 5.05518 5.11354 5.14176 5.18541 5.27804 5.31136 5.43625 5.51604 5.60462 5.73265 5.74707 5.85072 6.26813 6.44282 6.79738 6.93143 7.46332 8.95113 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055885 B = 0.007690 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.907789 B = 3640.073503 C = 3825.713413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.214 3.786 3 H -0.045 1.045 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.533 5.533 13 C 0.039 3.961 14 C 0.066 3.934 15 C -0.081 4.081 16 C -0.111 4.111 17 C -0.134 4.134 18 C -0.126 4.126 19 C -0.130 4.130 20 H 0.028 0.972 21 H 0.031 0.969 22 H 0.058 0.942 23 H 0.261 0.739 24 H -0.002 1.002 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.009 0.991 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -3.746 -13.366 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 H -0.028 1.028 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.257 5.257 13 C -0.110 4.110 14 C -0.062 4.062 15 C -0.082 4.082 16 C -0.168 4.168 17 C -0.172 4.172 18 C -0.164 4.164 19 C -0.168 4.168 20 H 0.047 0.953 21 H 0.050 0.950 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.327 -4.105 -13.214 14.031 hybrid contribution 0.449 0.921 1.275 1.635 sum 2.777 -3.184 -11.939 12.665 Atomic orbital electron populations 1.21648 0.97427 0.99170 0.99480 1.19040 0.92588 0.89903 0.87728 1.02756 1.21432 1.31070 1.12293 0.90976 0.92135 1.25751 0.95390 0.95784 1.02003 1.70025 1.37889 1.24278 1.24077 0.85567 0.78689 0.78715 0.78396 1.19685 1.20960 1.19573 1.62068 1.09949 1.51885 1.01749 1.22337 0.88148 0.98420 1.02046 1.22141 0.99582 0.94061 0.90396 1.21884 0.97258 0.96305 0.92709 1.21364 1.00489 0.93298 1.01663 1.23091 0.95674 1.01360 0.97043 1.22759 0.96010 1.01974 0.95609 1.22982 0.98486 1.00313 0.95037 0.95348 0.94958 0.92295 0.92968 0.98390 0.92777 0.89873 0.97266 0.91984 0.93314 0.91628 0.92804 0.91434 0.91221 0.89108 0.90709 0.90719 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.76 71.98 0.63 -5.43 16 2 C 0.21 11.35 2.06 44.17 0.09 11.44 16 3 H -0.04 -2.69 8.14 -2.39 -0.02 -2.71 16 4 C -0.52 -29.30 7.88 25.60 0.20 -29.09 16 5 H 0.06 3.37 6.41 -2.91 -0.02 3.35 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -54.42 11.32 21.45 0.24 -54.18 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.53 -23.33 3.53 -901.44 -3.18 -26.51 16 13 C 0.04 1.56 8.62 127.69 1.10 2.66 16 14 C 0.07 2.48 4.37 86.30 0.38 2.85 16 15 C -0.08 -2.32 0.79 -51.65 -0.04 -2.36 16 16 C -0.11 -3.12 8.92 71.98 0.64 -2.47 16 17 C -0.13 -3.36 5.21 31.12 0.16 -3.20 16 18 C -0.13 -2.50 7.73 31.12 0.24 -2.26 16 19 C -0.13 -3.01 7.23 31.12 0.23 -2.78 16 20 H 0.03 1.28 6.20 -2.39 -0.01 1.26 16 21 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 23 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.05 2.36 6.10 -2.38 -0.01 2.34 16 26 H 0.08 2.79 5.03 -2.39 -0.01 2.78 16 27 H 0.01 0.36 7.92 -2.39 -0.02 0.34 16 28 H 0.06 2.40 5.83 -2.39 -0.01 2.39 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.50 7.34 -2.39 -0.02 1.48 16 31 H 0.05 1.78 7.23 -2.39 -0.02 1.76 16 32 H 0.07 1.80 7.96 -2.39 -0.02 1.78 16 33 H 0.07 1.69 7.13 -2.39 -0.02 1.67 16 34 H 0.09 1.58 7.64 -2.39 -0.02 1.56 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 37 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -60.70 278.68 4.19 -56.51 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.02 Total: 7.47 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 4.08 Total: -29.69 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.94 Total: -80.69 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.70 4.19 -56.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388780841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.085 kcal (2) G-P(sol) polarization free energy of solvation -60.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds