Wall clock time and date at job start Sun Mar 29 2020 21:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46982 * 2 1 4 4 C 1.50702 * 109.46870 * 240.00317 * 2 1 3 5 5 H 1.07999 * 119.99551 * 239.99743 * 4 2 1 6 6 C 1.37872 * 120.00021 * 59.99702 * 4 2 1 7 7 N 1.31511 * 120.00309 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46843 * 60.00469 * 8 6 4 10 10 H 1.48500 * 109.47354 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47361 * 300.00592 * 8 6 4 12 12 N 1.46896 * 109.47144 * 120.00066 * 2 1 3 13 13 C 1.46900 * 110.99914 * 176.04725 * 12 2 1 14 14 C 1.46896 * 111.00480 * 300.00042 * 12 2 1 15 15 C 1.52995 * 109.47698 * 164.63603 * 14 12 2 16 16 C 1.53002 * 112.90898 * 316.80913 * 15 14 12 17 17 C 1.53781 * 113.61309 * 88.05604 * 15 14 12 18 18 C 1.53777 * 87.08032 * 89.12031 * 17 15 14 19 19 C 1.53780 * 87.08280 * 25.43378 * 18 17 15 20 20 H 1.08998 * 109.46928 * 299.99474 * 1 2 3 21 21 H 1.08999 * 109.47226 * 59.99739 * 1 2 3 22 22 H 1.09003 * 109.46982 * 179.97438 * 1 2 3 23 23 H 0.97003 * 120.00101 * 180.02562 * 7 6 4 24 24 H 1.09004 * 109.47232 * 190.68774 * 13 12 2 25 25 H 1.09004 * 109.47151 * 310.68285 * 13 12 2 26 26 H 1.08997 * 109.47143 * 70.68539 * 13 12 2 27 27 H 1.09002 * 109.46995 * 44.63611 * 14 12 2 28 28 H 1.09001 * 109.46949 * 284.64203 * 14 12 2 29 29 H 1.08997 * 109.47181 * 288.74841 * 16 15 14 30 30 H 1.09001 * 109.47143 * 48.74042 * 16 15 14 31 31 H 1.08995 * 109.47296 * 168.74589 * 16 15 14 32 32 H 1.09005 * 113.61305 * 203.66930 * 17 15 14 33 33 H 1.09002 * 113.61212 * 334.56756 * 17 15 14 34 34 H 1.09000 * 113.61548 * 270.88423 * 18 17 15 35 35 H 1.09005 * 113.61337 * 139.98319 * 18 17 15 36 36 H 1.08995 * 113.61498 * 220.02240 * 19 18 17 37 37 H 1.08993 * 113.61543 * 89.11838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.7410 -0.9603 3.6176 16 6 1.3288 -2.4032 3.3193 17 6 3.1246 -0.8389 4.2776 18 6 2.5177 0.2604 5.1653 19 6 1.1545 -0.4106 4.9286 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7088 1.1614 -3.4844 24 1 3.8091 -1.4696 1.9791 25 1 3.8142 -1.1816 0.2226 26 1 3.9193 0.1919 1.3500 27 1 0.4916 0.2179 2.3171 28 1 2.1194 0.8887 2.5790 29 1 0.2433 -2.4619 3.2397 30 1 1.7796 -2.7231 2.3799 31 1 1.6696 -3.0526 4.1256 32 1 3.4248 -1.7297 4.8295 33 1 3.9001 -0.4767 3.6026 34 1 2.5931 1.2594 4.7360 35 1 2.8512 0.2179 6.2023 36 1 0.3394 0.2974 4.7792 37 1 0.9160 -1.1842 5.6585 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388780846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:02 Heat of formation + Delta-G solvation = 19.869839 kcal Electronic energy + Delta-G solvation = -14962.543410 eV Core-core repulsion = 12740.518017 eV Total energy + Delta-G solvation = -2222.025394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49083 -36.19169 -32.65090 -29.73791 -28.94004 -26.98306 -25.39154 -24.58145 -23.37132 -21.78295 -19.44283 -17.78858 -16.15451 -15.29963 -14.99702 -14.65944 -14.09117 -13.45240 -13.21615 -12.91112 -12.55846 -12.24876 -12.06616 -11.73587 -11.10070 -11.04957 -10.97638 -10.90002 -10.73611 -10.47450 -10.23166 -10.12595 -9.98884 -9.89389 -9.59461 -9.39437 -8.80234 -8.38453 -7.06937 -5.98054 -4.02305 3.33674 3.37949 3.40865 4.42635 4.81844 4.89728 4.98631 5.09765 5.30873 5.39759 5.68433 5.84987 5.91335 5.97117 6.08258 6.17441 6.21301 6.23685 6.26892 6.42036 6.47508 6.51831 6.65206 6.76136 6.88024 6.93711 7.00915 7.11401 7.22829 7.58697 7.79684 7.86295 8.27569 8.38575 8.67375 9.04505 9.62436 11.08776 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053443 B = 0.007845 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.795969 B = 3568.228504 C = 3713.303663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.531 5.531 13 C 0.033 3.967 14 C 0.073 3.927 15 C -0.072 4.072 16 C -0.124 4.124 17 C -0.138 4.138 18 C -0.142 4.142 19 C -0.135 4.135 20 H 0.008 0.992 21 H 0.084 0.916 22 H 0.034 0.966 23 H 0.260 0.740 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.005 0.995 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -2.223 11.603 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.255 5.255 13 C -0.116 4.116 14 C -0.055 4.055 15 C -0.072 4.072 16 C -0.181 4.181 17 C -0.176 4.176 18 C -0.180 4.180 19 C -0.173 4.173 20 H 0.027 0.973 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.024 0.976 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.527 -2.574 11.429 11.814 hybrid contribution 0.617 0.481 -0.824 1.136 sum 2.144 -2.093 10.604 11.019 Atomic orbital electron populations 1.21853 0.97846 0.99603 0.99721 1.19221 0.92244 0.91934 0.86090 0.98723 1.21131 1.30924 1.12222 0.89818 0.91893 1.24931 0.95265 0.95091 0.98990 1.69886 1.36988 1.23048 1.23436 0.86596 0.79045 0.79775 0.82182 1.20238 1.21398 1.20394 1.62054 1.09019 1.52423 1.01986 1.22370 0.89058 0.98158 1.02011 1.21891 1.00671 0.93248 0.89724 1.21771 0.95365 0.96699 0.93413 1.21565 1.00830 0.93934 1.01800 1.23165 0.97427 0.98413 0.98568 1.22804 0.97346 0.98574 0.99256 1.23007 0.96703 0.99806 0.97789 0.97322 0.89784 0.94695 0.92989 0.93326 0.90549 0.97603 0.90704 0.96105 0.93380 0.90362 0.94495 0.90784 0.91287 0.90548 0.92272 0.91883 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.79 37.16 0.33 -2.95 16 2 C 0.21 5.40 2.06 -68.86 -0.14 5.25 16 3 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 4 C -0.50 -13.83 7.79 -34.44 -0.27 -14.10 16 5 H 0.06 1.72 6.46 -52.49 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.53 -11.46 3.29 -236.29 -0.78 -12.24 16 13 C 0.03 0.65 8.12 60.06 0.49 1.14 16 14 C 0.07 1.37 4.32 -3.83 -0.02 1.35 16 15 C -0.07 -1.11 0.84 -153.70 -0.13 -1.24 16 16 C -0.12 -1.93 9.01 37.16 0.33 -1.60 16 17 C -0.14 -1.92 6.26 -25.92 -0.16 -2.08 16 18 C -0.14 -1.80 7.73 -25.92 -0.20 -2.00 16 19 C -0.14 -1.78 7.23 -25.92 -0.19 -1.96 16 20 H 0.01 0.18 6.11 -51.93 -0.32 -0.14 16 21 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.05 0.85 6.10 -51.93 -0.32 0.54 16 25 H 0.08 1.65 5.92 -51.93 -0.31 1.35 16 26 H 0.01 0.11 7.98 -51.93 -0.41 -0.30 16 27 H 0.07 1.45 5.64 -51.93 -0.29 1.16 16 28 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.39 7.01 -51.93 -0.36 1.03 16 31 H 0.04 0.50 7.94 -51.93 -0.41 0.08 16 32 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 33 H 0.07 1.02 6.16 -51.93 -0.32 0.70 16 34 H 0.08 0.99 7.72 -51.93 -0.40 0.59 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 278.28 15.07 4.19 4.19 Total: -1.00 -27.87 278.28 -7.28 -35.15 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.25 Total: -1.78 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.15 Total: -37.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.87 -7.28 -35.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388780846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.018 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds