Wall clock time and date at job start Sun Mar 29 2020 21:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46982 * 2 1 4 4 C 1.50702 * 109.46870 * 240.00317 * 2 1 3 5 5 H 1.07999 * 119.99551 * 239.99743 * 4 2 1 6 6 C 1.37872 * 120.00021 * 59.99702 * 4 2 1 7 7 N 1.31511 * 120.00309 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46843 * 60.00469 * 8 6 4 10 10 H 1.48500 * 109.47354 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47361 * 300.00592 * 8 6 4 12 12 N 1.46896 * 109.47144 * 120.00066 * 2 1 3 13 13 C 1.46900 * 110.99914 * 176.04725 * 12 2 1 14 14 C 1.46896 * 111.00480 * 300.00042 * 12 2 1 15 15 C 1.52995 * 109.47698 * 164.63603 * 14 12 2 16 16 C 1.53002 * 112.90898 * 316.80913 * 15 14 12 17 17 C 1.53781 * 113.61309 * 88.05604 * 15 14 12 18 18 C 1.53777 * 87.08032 * 89.12031 * 17 15 14 19 19 C 1.53780 * 87.08280 * 25.43378 * 18 17 15 20 20 H 1.08998 * 109.46928 * 299.99474 * 1 2 3 21 21 H 1.08999 * 109.47226 * 59.99739 * 1 2 3 22 22 H 1.09003 * 109.46982 * 179.97438 * 1 2 3 23 23 H 0.97003 * 120.00101 * 180.02562 * 7 6 4 24 24 H 1.09004 * 109.47232 * 190.68774 * 13 12 2 25 25 H 1.09004 * 109.47151 * 310.68285 * 13 12 2 26 26 H 1.08997 * 109.47143 * 70.68539 * 13 12 2 27 27 H 1.09002 * 109.46995 * 44.63611 * 14 12 2 28 28 H 1.09001 * 109.46949 * 284.64203 * 14 12 2 29 29 H 1.08997 * 109.47181 * 288.74841 * 16 15 14 30 30 H 1.09001 * 109.47143 * 48.74042 * 16 15 14 31 31 H 1.08995 * 109.47296 * 168.74589 * 16 15 14 32 32 H 1.09005 * 113.61305 * 203.66930 * 17 15 14 33 33 H 1.09002 * 113.61212 * 334.56756 * 17 15 14 34 34 H 1.09000 * 113.61548 * 270.88423 * 18 17 15 35 35 H 1.09005 * 113.61337 * 139.98319 * 18 17 15 36 36 H 1.08995 * 113.61498 * 220.02240 * 19 18 17 37 37 H 1.08993 * 113.61543 * 89.11838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.7410 -0.9603 3.6176 16 6 1.3288 -2.4032 3.3193 17 6 3.1246 -0.8389 4.2776 18 6 2.5177 0.2604 5.1653 19 6 1.1545 -0.4106 4.9286 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7088 1.1614 -3.4844 24 1 3.8091 -1.4696 1.9791 25 1 3.8142 -1.1816 0.2226 26 1 3.9193 0.1919 1.3500 27 1 0.4916 0.2179 2.3171 28 1 2.1194 0.8887 2.5790 29 1 0.2433 -2.4619 3.2397 30 1 1.7796 -2.7231 2.3799 31 1 1.6696 -3.0526 4.1256 32 1 3.4248 -1.7297 4.8295 33 1 3.9001 -0.4767 3.6026 34 1 2.5931 1.2594 4.7360 35 1 2.8512 0.2179 6.2023 36 1 0.3394 0.2974 4.7792 37 1 0.9160 -1.1842 5.6585 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388780846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:01 Heat of formation + Delta-G solvation = 4.581054 kcal Electronic energy + Delta-G solvation = -14963.206382 eV Core-core repulsion = 12740.518017 eV Total energy + Delta-G solvation = -2222.688365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75436 -37.90891 -34.66271 -31.36157 -30.55308 -28.61922 -26.78358 -26.27278 -25.01005 -23.06293 -21.28447 -19.11203 -18.18432 -17.10109 -16.21771 -16.08442 -15.92525 -15.03278 -14.79740 -14.34553 -14.18747 -13.74235 -13.50955 -13.25624 -12.91572 -12.75626 -12.60441 -12.40634 -12.22112 -12.09149 -11.99605 -11.92291 -11.77805 -11.22810 -10.97073 -10.74507 -10.67309 -10.48116 -8.86700 -8.10727 -6.22536 1.42309 1.44326 1.51773 2.42496 3.17008 3.37094 3.73142 3.87960 3.97357 4.04996 4.39145 4.57757 4.65035 4.70750 4.74494 4.84244 4.92349 4.98326 5.00295 5.05261 5.06861 5.09595 5.14045 5.14909 5.29759 5.33787 5.46920 5.52135 5.63441 5.73414 5.74682 5.85015 6.26913 6.43562 6.78962 6.93213 7.46588 8.95300 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053443 B = 0.007845 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.795969 B = 3568.228504 C = 3713.303663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.044 1.044 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.532 5.532 13 C 0.039 3.961 14 C 0.075 3.925 15 C -0.081 4.081 16 C -0.119 4.119 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.126 4.126 20 H 0.028 0.972 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.002 0.998 27 H 0.063 0.937 28 H 0.015 0.985 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -3.305 13.020 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.026 1.026 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.053 4.053 15 C -0.082 4.082 16 C -0.177 4.177 17 C -0.173 4.173 18 C -0.174 4.174 19 C -0.164 4.164 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.021 0.979 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.044 -3.662 12.865 13.532 hybrid contribution 0.459 0.838 -1.217 1.547 sum 2.503 -2.824 11.649 12.245 Atomic orbital electron populations 1.21657 0.97420 0.99173 0.99484 1.19034 0.92580 0.89975 0.87627 1.02631 1.21416 1.31064 1.12292 0.90932 0.92098 1.25734 0.95403 0.95775 1.01972 1.70021 1.37857 1.24254 1.24075 0.85575 0.78700 0.78696 0.78437 1.19635 1.20996 1.19667 1.62036 1.09920 1.51928 1.01712 1.22328 0.88124 0.98485 1.01950 1.21923 0.99613 0.93906 0.89860 1.21757 0.97576 0.95863 0.92994 1.21512 1.00380 0.94348 1.01426 1.23177 0.95893 0.99691 0.98516 1.22768 0.96678 0.97647 1.00286 1.22998 0.96879 1.00143 0.96375 0.95301 0.92264 0.94994 0.92968 0.90453 0.92485 0.97943 0.91830 0.96710 0.93868 0.92924 0.91951 0.88836 0.92555 0.91470 0.89951 0.92129 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.79 71.98 0.63 -5.40 16 2 C 0.21 11.27 2.06 44.17 0.09 11.36 16 3 H -0.04 -2.59 8.14 -2.39 -0.02 -2.61 16 4 C -0.52 -29.04 7.79 25.60 0.20 -28.84 16 5 H 0.06 3.37 6.46 -2.91 -0.02 3.35 16 6 C 0.01 0.54 5.30 84.65 0.45 0.98 16 7 N -0.92 -54.08 11.32 21.44 0.24 -53.83 16 8 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 N -0.53 -23.14 3.29 -901.48 -2.96 -26.10 16 13 C 0.04 1.58 8.12 127.69 1.04 2.62 16 14 C 0.08 2.79 4.32 86.30 0.37 3.16 16 15 C -0.08 -2.35 0.84 -51.66 -0.04 -2.39 16 16 C -0.12 -3.47 9.01 71.98 0.65 -2.82 16 17 C -0.14 -3.37 6.26 31.12 0.19 -3.18 16 18 C -0.14 -3.03 7.73 31.12 0.24 -2.79 16 19 C -0.13 -2.94 7.23 31.12 0.23 -2.71 16 20 H 0.03 1.29 6.11 -2.39 -0.01 1.28 16 21 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 22 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.08 2.63 6.10 -2.38 -0.01 2.61 16 25 H 0.06 2.49 5.92 -2.38 -0.01 2.48 16 26 H 0.00 0.08 7.98 -2.39 -0.02 0.06 16 27 H 0.06 2.47 5.64 -2.39 -0.01 2.45 16 28 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.80 7.01 -2.39 -0.02 1.78 16 31 H 0.06 1.48 7.94 -2.39 -0.02 1.46 16 32 H 0.09 1.99 7.96 -2.38 -0.02 1.97 16 33 H 0.06 1.54 6.16 -2.39 -0.01 1.53 16 34 H 0.07 1.62 7.72 -2.39 -0.02 1.60 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -59.93 278.28 4.37 -55.56 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.02 Total: 8.18 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.05 Total: -30.01 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -2.72 Total: -79.94 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -59.93 4.37 -55.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388780846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.141 kcal (2) G-P(sol) polarization free energy of solvation -59.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds