Wall clock time and date at job start Sun Mar 29 2020 21:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46652 * 2 1 4 4 H 1.08999 * 109.47300 * 304.20730 * 3 2 1 5 5 C 1.50699 * 109.46787 * 184.20931 * 3 2 1 6 6 H 1.08009 * 119.99758 * 245.44840 * 5 3 2 7 7 C 1.37875 * 120.00278 * 65.44560 * 5 3 2 8 8 N 1.31509 * 120.00151 * 9.44328 * 7 5 3 9 9 Si 1.86807 * 120.00071 * 189.43536 * 7 5 3 10 10 H 1.48491 * 109.46812 * 84.99673 * 9 7 5 11 11 H 1.48500 * 109.47025 * 204.99850 * 9 7 5 12 12 H 1.48500 * 109.47072 * 324.99852 * 9 7 5 13 13 N 1.46897 * 109.47177 * 64.20892 * 3 2 1 14 14 C 1.46901 * 111.00006 * 274.99557 * 13 3 2 15 15 C 1.53776 * 113.61599 * 252.50067 * 14 13 3 16 16 C 1.53784 * 87.08204 * 220.01751 * 15 14 13 17 17 C 1.52997 * 113.61366 * 270.88267 * 16 15 14 18 18 C 1.53001 * 113.69151 * 139.99069 * 16 15 14 19 19 C 1.53776 * 113.61540 * 154.99828 * 14 13 3 20 20 H 1.09006 * 109.46958 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47262 * 300.00196 * 1 2 3 22 22 H 1.08996 * 109.46889 * 60.00413 * 1 2 3 23 23 H 1.08997 * 109.47209 * 240.00356 * 2 1 3 24 24 H 1.09000 * 109.47361 * 119.99446 * 2 1 3 25 25 H 0.96994 * 120.00372 * 179.97438 * 8 7 5 26 26 H 1.00898 * 111.00496 * 38.95402 * 13 3 2 27 27 H 1.09006 * 112.84742 * 23.80880 * 14 13 3 28 28 H 1.09004 * 113.61434 * 334.56556 * 15 14 13 29 29 H 1.08996 * 113.61634 * 105.47129 * 15 14 13 30 30 H 1.09002 * 109.47053 * 157.49062 * 17 16 15 31 31 H 1.08996 * 109.47278 * 277.49541 * 17 16 15 32 32 H 1.09007 * 109.47444 * 37.49850 * 17 16 15 33 33 H 1.08999 * 109.47293 * 322.46465 * 18 16 15 34 34 H 1.09001 * 109.46835 * 82.46528 * 18 16 15 35 35 H 1.09000 * 109.46710 * 202.46358 * 18 16 15 36 36 H 1.08994 * 113.62059 * 254.53406 * 19 14 13 37 37 H 1.09004 * 113.61657 * 25.43771 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6163 1.9777 -0.8499 5 6 3.5433 1.4439 -0.1043 6 1 4.1412 1.8121 0.7164 7 6 4.1555 0.9750 -1.2472 8 7 3.4361 0.7015 -2.3136 9 14 6.0069 0.7285 -1.2812 10 1 6.3385 -0.6083 -0.7262 11 1 6.4925 0.8174 -2.6817 12 1 6.6615 1.7806 -0.4626 13 7 1.6350 2.1051 1.2470 14 6 0.2762 2.6521 1.1353 15 6 0.2360 4.1859 1.0334 16 6 -0.9911 4.1368 1.9590 17 6 -2.3183 3.9994 1.2104 18 6 -1.0137 5.2491 3.0093 19 6 -0.4408 2.8016 2.4875 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 3.8668 0.3720 -3.1178 26 1 1.7077 1.4748 2.0315 27 1 -0.3224 2.1469 0.3772 28 1 1.1009 4.6760 1.4805 29 1 0.0125 4.5512 0.0311 30 1 -3.0703 3.5791 1.8783 31 1 -2.6451 4.9809 0.8670 32 1 -2.1852 3.3401 0.3526 33 1 -0.0002 5.4332 3.3656 34 1 -1.4138 6.1604 2.5648 35 1 -1.6434 4.9461 3.8458 36 1 -1.2106 2.0494 2.6591 37 1 0.2390 2.9132 3.3322 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388858764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:43 Heat of formation + Delta-G solvation = -14.133232 kcal Electronic energy + Delta-G solvation = -14731.833351 eV Core-core repulsion = 12508.333474 eV Total energy + Delta-G solvation = -2223.499878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72238 -37.50306 -34.25222 -32.28750 -30.33691 -28.22544 -28.03468 -26.54640 -24.75243 -21.81462 -21.73408 -19.09400 -18.30245 -16.97419 -16.52191 -15.78656 -15.46113 -15.12360 -14.73433 -14.56033 -13.95234 -13.64922 -13.51360 -13.27597 -13.04562 -12.77533 -12.61579 -12.52637 -12.33456 -12.17686 -12.01181 -11.67476 -11.64467 -11.47361 -11.20405 -10.86544 -10.60956 -10.42559 -8.83271 -8.10707 -6.17734 1.41782 1.42107 1.52364 2.44471 3.18104 3.64230 3.71547 3.82048 4.07284 4.16387 4.38833 4.45460 4.49501 4.62319 4.64771 4.85242 4.85600 4.95789 4.99513 5.02540 5.05516 5.10220 5.16897 5.21726 5.27924 5.30301 5.36124 5.53888 5.65476 5.68738 5.73283 5.83379 6.29978 6.75653 6.94420 7.00901 7.50722 8.96825 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043806 B = 0.007753 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.030404 B = 3610.712826 C = 3905.299073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.224 3.776 4 H -0.001 1.001 5 C -0.518 4.518 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.676 5.676 14 C 0.045 3.955 15 C -0.125 4.125 16 C -0.080 4.080 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.124 4.124 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 4.104 8.669 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.557 4.557 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.306 5.306 14 C -0.065 4.065 15 C -0.163 4.163 16 C -0.080 4.080 17 C -0.183 4.183 18 C -0.185 4.185 19 C -0.162 4.162 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.798 4.644 8.326 13.671 hybrid contribution 0.749 -1.092 -0.636 1.469 sum -9.048 3.553 7.690 12.395 Atomic orbital electron populations 1.21952 0.96265 1.00962 1.00843 1.22036 0.94688 1.00734 1.00044 1.18910 0.93719 0.88726 0.87095 0.98273 1.21491 0.92854 1.40410 1.00951 0.92974 1.25700 1.02397 0.95712 0.94970 1.70085 1.37172 1.46398 1.02632 0.85623 0.80671 0.78694 0.76955 1.19887 1.21128 1.19616 1.60776 1.23067 1.40885 1.05832 1.23278 0.89389 0.95692 0.98145 1.23189 0.97830 0.96627 0.98675 1.21643 0.94389 0.95733 0.96278 1.21594 0.95091 1.02047 0.99562 1.21664 1.01729 0.97249 0.97861 1.23261 0.99220 0.97455 0.96249 0.92727 0.91591 0.94551 0.93837 0.94079 0.93117 0.85281 0.91553 0.91040 0.93730 0.90988 0.91613 0.93745 0.93130 0.92077 0.91411 0.90875 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.47 71.98 0.61 -4.82 16 2 C -0.14 -6.35 5.28 30.60 0.16 -6.19 16 3 C 0.22 11.52 2.04 44.17 0.09 11.61 16 4 H 0.00 -0.04 7.78 -2.39 -0.02 -0.06 16 5 C -0.52 -29.60 8.76 25.60 0.22 -29.37 16 6 H 0.05 3.00 7.83 -2.91 -0.02 2.97 16 7 C 0.01 0.60 5.17 84.65 0.44 1.04 16 8 N -0.92 -54.92 12.16 21.45 0.26 -54.66 16 9 Si 0.95 44.98 29.55 68.60 2.03 47.01 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.68 -28.91 6.23 -470.62 -2.93 -31.84 16 14 C 0.05 1.60 2.11 45.44 0.10 1.69 16 15 C -0.12 -4.16 7.00 31.12 0.22 -3.94 16 16 C -0.08 -2.01 1.39 -51.65 -0.07 -2.08 16 17 C -0.13 -2.77 9.07 71.98 0.65 -2.11 16 18 C -0.13 -2.66 9.19 71.98 0.66 -2.00 16 19 C -0.12 -3.36 6.76 31.12 0.21 -3.15 16 20 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 21 H 0.07 2.23 5.60 -2.39 -0.01 2.22 16 22 H 0.04 1.42 7.85 -2.39 -0.02 1.41 16 23 H 0.04 2.33 6.81 -2.39 -0.02 2.31 16 24 H 0.04 1.84 8.06 -2.39 -0.02 1.83 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.33 13.15 8.24 -89.70 -0.74 12.41 16 27 H 0.07 2.49 4.64 -2.38 -0.01 2.48 16 28 H 0.07 2.54 7.97 -2.39 -0.02 2.52 16 29 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.09 7.34 -2.38 -0.02 1.08 16 33 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -61.37 287.89 2.92 -58.44 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.28 Total: 20.38 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 3.29 Total: -39.33 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.67 Total: -86.50 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -61.37 2.92 -58.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388858764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.311 kcal (2) G-P(sol) polarization free energy of solvation -61.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds