Wall clock time and date at job start Sun Mar 29 2020 21:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46980 * 2 1 4 4 H 1.09004 * 109.47320 * 54.58728 * 3 2 1 5 5 C 1.50703 * 109.47303 * 174.58691 * 3 2 1 6 6 H 1.07990 * 120.00136 * 119.99661 * 5 3 2 7 7 C 1.37874 * 119.99392 * 300.00346 * 5 3 2 8 8 N 1.31513 * 120.00826 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99879 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46816 * 59.99516 * 9 7 5 11 11 H 1.48495 * 109.47215 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46969 * 299.99908 * 9 7 5 13 13 N 1.46904 * 109.47422 * 294.58586 * 3 2 1 14 14 C 1.46897 * 111.00108 * 152.61761 * 13 3 2 15 15 C 1.53774 * 113.61793 * 254.40921 * 14 13 3 16 16 C 1.53778 * 87.08382 * 220.02315 * 15 14 13 17 17 C 1.53002 * 113.61272 * 270.88451 * 16 15 14 18 18 C 1.52993 * 113.61660 * 139.98341 * 16 15 14 19 19 C 1.53782 * 87.08078 * 25.43174 * 16 15 14 20 20 H 1.09001 * 109.46807 * 301.56559 * 1 2 3 21 21 H 1.09001 * 109.47231 * 61.56083 * 1 2 3 22 22 H 1.08995 * 109.47316 * 181.56939 * 1 2 3 23 23 H 1.08997 * 109.46793 * 240.00699 * 2 1 3 24 24 H 1.08995 * 109.47183 * 119.99810 * 2 1 3 25 25 H 0.96995 * 120.00788 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99494 * 28.66342 * 13 3 2 27 27 H 1.09003 * 112.90836 * 25.66826 * 14 13 3 28 28 H 1.09004 * 113.61631 * 334.57115 * 15 14 13 29 29 H 1.09001 * 113.61410 * 105.46701 * 15 14 13 30 30 H 1.08998 * 109.47395 * 157.49667 * 17 16 15 31 31 H 1.09008 * 109.47195 * 277.49963 * 17 16 15 32 32 H 1.09003 * 109.46997 * 37.49218 * 17 16 15 33 33 H 1.09001 * 109.47012 * 322.50372 * 18 16 15 34 34 H 1.09006 * 109.47539 * 82.49782 * 18 16 15 35 35 H 1.08998 * 109.47360 * 202.50225 * 18 16 15 36 36 H 1.09001 * 113.61408 * 220.02043 * 19 16 15 37 37 H 1.09001 * 113.68839 * 89.12898 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8376 5 6 3.5410 1.4447 0.1340 6 1 4.1515 1.8873 -0.6390 7 6 4.1348 0.8814 1.2436 8 7 3.3913 0.3426 2.1852 9 14 5.9955 0.8834 1.4095 10 1 6.4909 2.2834 1.4092 11 1 6.3796 0.2231 2.6830 12 1 6.5949 0.1459 0.2685 13 7 1.6599 2.0963 -1.2594 14 6 1.5249 3.5479 -1.0792 15 6 0.0658 4.0329 -1.0570 16 6 0.5363 5.2385 -1.8875 17 6 0.9990 6.4244 -1.0387 18 6 -0.4433 5.6424 -2.9911 19 6 1.6886 4.3482 -2.3821 20 1 -0.3633 0.5380 0.8756 21 1 -0.3634 0.4894 -0.9036 22 1 -0.3634 -1.0272 0.0281 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8090 -0.0533 2.9659 26 1 0.8112 1.6976 -1.6320 27 1 2.1248 3.9306 -0.2535 28 1 -0.6209 3.3760 -1.5911 29 1 -0.2904 4.3002 -0.0621 30 1 1.6668 7.0537 -1.6269 31 1 0.1326 7.0071 -0.7255 32 1 1.5271 6.0572 -0.1586 33 1 -0.8877 4.7480 -3.4276 34 1 -1.2287 6.2690 -2.5684 35 1 0.0884 6.1979 -3.7636 36 1 2.6425 4.8703 -2.4570 37 1 1.4470 3.7772 -3.2786 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388858768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:45 Heat of formation + Delta-G solvation = -0.628575 kcal Electronic energy + Delta-G solvation = -14672.788810 eV Core-core repulsion = 12449.874539 eV Total energy + Delta-G solvation = -2222.914272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34043 -35.60264 -32.18987 -31.03971 -28.53824 -27.26755 -26.06720 -25.21569 -22.82766 -20.60469 -19.57148 -17.84629 -16.17130 -15.16201 -14.79926 -14.40540 -13.98555 -13.69839 -13.19376 -12.82545 -12.49091 -12.30087 -12.02534 -11.86365 -11.52857 -11.27174 -11.17025 -10.95502 -10.78692 -10.61748 -10.43869 -10.01667 -9.90357 -9.73952 -9.60981 -9.19386 -8.99279 -8.30017 -7.09115 -5.91785 -3.95855 3.36918 3.40760 3.44581 4.48727 4.79758 5.00157 5.05209 5.34220 5.36579 5.57638 5.72857 5.76359 5.82665 5.98954 6.07944 6.10638 6.16861 6.19655 6.20326 6.23718 6.29108 6.42947 6.46151 6.53963 6.80772 6.87765 6.95369 7.13134 7.24012 7.58307 7.83195 7.98845 8.40881 8.47062 8.84708 9.12798 9.69105 11.13330 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.008830 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.636014 B = 3170.332171 C = 3741.523760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.086 3.914 15 C -0.163 4.163 16 C -0.093 4.093 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.122 4.122 20 H 0.042 0.958 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.099 0.901 25 H 0.259 0.741 26 H 0.318 0.682 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 7.277 -6.058 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.307 5.307 14 C -0.026 4.026 15 C -0.202 4.202 16 C -0.094 4.094 17 C -0.183 4.183 18 C -0.188 4.188 19 C -0.160 4.160 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.776 7.189 -6.097 11.056 hybrid contribution 0.113 -0.010 0.669 0.679 sum -5.664 7.180 -5.428 10.634 Atomic orbital electron populations 1.21875 0.99650 0.99501 0.99623 1.21788 0.91199 1.00600 1.02999 1.19158 0.95254 0.89843 0.84616 0.98000 1.21221 0.91402 1.36212 1.04219 0.92148 1.24961 0.98014 0.95737 0.95886 1.69861 1.34725 1.39610 1.09609 0.86625 0.85941 0.78106 0.77076 1.20467 1.21498 1.20342 1.60600 1.36930 1.01345 1.31782 1.22821 0.93235 0.89681 0.96877 1.23861 0.99410 0.97537 0.99417 1.21690 0.97112 0.94307 0.96297 1.21572 1.00563 0.96674 0.99511 1.21688 0.98346 1.00881 0.97849 1.23188 0.96946 0.96953 0.98922 0.93893 0.94673 0.94484 0.94162 0.88296 0.93098 0.86328 0.88694 0.90758 0.92331 0.92724 0.93031 0.92138 0.92826 0.93256 0.92995 0.92126 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.73 37.16 0.36 -2.57 16 2 C -0.13 -3.04 5.34 -26.73 -0.14 -3.18 16 3 C 0.22 5.49 1.89 -68.86 -0.13 5.36 16 4 H 0.00 0.06 7.80 -51.93 -0.40 -0.34 16 5 C -0.49 -13.75 8.76 -34.44 -0.30 -14.05 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.80 11.29 55.43 0.63 -25.17 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.55 6.41 -100.10 -0.64 -15.19 16 14 C 0.09 1.62 3.56 -66.90 -0.24 1.38 16 15 C -0.16 -2.59 6.82 -25.92 -0.18 -2.76 16 16 C -0.09 -1.31 1.39 -153.70 -0.21 -1.52 16 17 C -0.13 -1.63 9.07 37.16 0.34 -1.30 16 18 C -0.13 -1.55 9.19 37.15 0.34 -1.20 16 19 C -0.12 -1.96 7.03 -25.92 -0.18 -2.14 16 20 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.03 0.62 6.51 -51.93 -0.34 0.28 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.32 6.29 5.99 -39.29 -0.24 6.06 16 27 H 0.10 2.02 7.38 -51.93 -0.38 1.64 16 28 H 0.07 1.14 7.65 -51.93 -0.40 0.74 16 29 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.85 7.34 -51.93 -0.38 0.47 16 33 H 0.05 0.63 7.94 -51.93 -0.41 0.21 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -28.03 290.60 -7.72 -35.75 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.63 Total: 4.05 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -0.44 Total: -20.56 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.02 Total: -40.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.03 -7.72 -35.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388858768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.122 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds