Wall clock time and date at job start Sun Mar 29 2020 21:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46980 * 2 1 4 4 H 1.09004 * 109.47320 * 54.58728 * 3 2 1 5 5 C 1.50703 * 109.47303 * 174.58691 * 3 2 1 6 6 H 1.07990 * 120.00136 * 119.99661 * 5 3 2 7 7 C 1.37874 * 119.99392 * 300.00346 * 5 3 2 8 8 N 1.31513 * 120.00826 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99879 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46816 * 59.99516 * 9 7 5 11 11 H 1.48495 * 109.47215 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46969 * 299.99908 * 9 7 5 13 13 N 1.46904 * 109.47422 * 294.58586 * 3 2 1 14 14 C 1.46897 * 111.00108 * 152.61761 * 13 3 2 15 15 C 1.53774 * 113.61793 * 254.40921 * 14 13 3 16 16 C 1.53778 * 87.08382 * 220.02315 * 15 14 13 17 17 C 1.53002 * 113.61272 * 270.88451 * 16 15 14 18 18 C 1.52993 * 113.61660 * 139.98341 * 16 15 14 19 19 C 1.53782 * 87.08078 * 25.43174 * 16 15 14 20 20 H 1.09001 * 109.46807 * 301.56559 * 1 2 3 21 21 H 1.09001 * 109.47231 * 61.56083 * 1 2 3 22 22 H 1.08995 * 109.47316 * 181.56939 * 1 2 3 23 23 H 1.08997 * 109.46793 * 240.00699 * 2 1 3 24 24 H 1.08995 * 109.47183 * 119.99810 * 2 1 3 25 25 H 0.96995 * 120.00788 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99494 * 28.66342 * 13 3 2 27 27 H 1.09003 * 112.90836 * 25.66826 * 14 13 3 28 28 H 1.09004 * 113.61631 * 334.57115 * 15 14 13 29 29 H 1.09001 * 113.61410 * 105.46701 * 15 14 13 30 30 H 1.08998 * 109.47395 * 157.49667 * 17 16 15 31 31 H 1.09008 * 109.47195 * 277.49963 * 17 16 15 32 32 H 1.09003 * 109.46997 * 37.49218 * 17 16 15 33 33 H 1.09001 * 109.47012 * 322.50372 * 18 16 15 34 34 H 1.09006 * 109.47539 * 82.49782 * 18 16 15 35 35 H 1.08998 * 109.47360 * 202.50225 * 18 16 15 36 36 H 1.09001 * 113.61408 * 220.02043 * 19 16 15 37 37 H 1.09001 * 113.68839 * 89.12898 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8376 5 6 3.5410 1.4447 0.1340 6 1 4.1515 1.8873 -0.6390 7 6 4.1348 0.8814 1.2436 8 7 3.3913 0.3426 2.1852 9 14 5.9955 0.8834 1.4095 10 1 6.4909 2.2834 1.4092 11 1 6.3796 0.2231 2.6830 12 1 6.5949 0.1459 0.2685 13 7 1.6599 2.0963 -1.2594 14 6 1.5249 3.5479 -1.0792 15 6 0.0658 4.0329 -1.0570 16 6 0.5363 5.2385 -1.8875 17 6 0.9990 6.4244 -1.0387 18 6 -0.4433 5.6424 -2.9911 19 6 1.6886 4.3482 -2.3821 20 1 -0.3633 0.5380 0.8756 21 1 -0.3634 0.4894 -0.9036 22 1 -0.3634 -1.0272 0.0281 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8090 -0.0533 2.9659 26 1 0.8112 1.6976 -1.6320 27 1 2.1248 3.9306 -0.2535 28 1 -0.6209 3.3760 -1.5911 29 1 -0.2904 4.3002 -0.0621 30 1 1.6668 7.0537 -1.6269 31 1 0.1326 7.0071 -0.7255 32 1 1.5271 6.0572 -0.1586 33 1 -0.8877 4.7480 -3.4276 34 1 -1.2287 6.2690 -2.5684 35 1 0.0884 6.1979 -3.7636 36 1 2.6425 4.8703 -2.4570 37 1 1.4470 3.7772 -3.2786 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388858768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:45 Heat of formation + Delta-G solvation = -17.018798 kcal Electronic energy + Delta-G solvation = -14673.499544 eV Core-core repulsion = 12449.874539 eV Total energy + Delta-G solvation = -2223.625005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68342 -37.42346 -34.17213 -32.65566 -30.02008 -28.29086 -27.99089 -26.52718 -24.72359 -22.06307 -21.49928 -19.08071 -18.31652 -16.93048 -16.31749 -16.12850 -15.37250 -15.01527 -14.68780 -14.61815 -13.78661 -13.72106 -13.51737 -13.28092 -13.08453 -12.80502 -12.65542 -12.56753 -12.43941 -12.24760 -12.01790 -11.80788 -11.52706 -11.48006 -11.08587 -10.89510 -10.66351 -10.42668 -8.86808 -8.05853 -6.18603 1.40441 1.41994 1.49920 2.43663 3.18070 3.59380 3.70966 3.76489 4.00583 4.25925 4.43720 4.49851 4.56866 4.63334 4.71397 4.80171 4.81709 4.91830 4.95459 5.02709 5.06708 5.11460 5.18780 5.22139 5.29367 5.31260 5.36027 5.58931 5.59957 5.67398 5.77891 5.93237 6.39079 6.59023 6.96470 7.06878 7.50899 8.96516 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.008830 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.636014 B = 3170.332171 C = 3741.523760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.033 1.033 5 C -0.513 4.513 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.067 3.933 15 C -0.154 4.154 16 C -0.080 4.080 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.116 4.116 20 H 0.035 0.965 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 8.068 -7.351 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.119 3.881 4 H -0.016 1.016 5 C -0.552 4.552 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.310 5.310 14 C -0.044 4.044 15 C -0.194 4.194 16 C -0.080 4.080 17 C -0.184 4.184 18 C -0.183 4.183 19 C -0.154 4.154 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.556 7.994 -7.403 12.715 hybrid contribution 0.358 -0.240 1.080 1.162 sum -6.198 7.753 -6.324 11.769 Atomic orbital electron populations 1.21735 0.96199 1.01147 1.00404 1.21618 0.94315 0.99141 1.01117 1.18895 0.93735 0.90512 0.84989 1.01569 1.21487 0.93051 1.36451 1.04208 0.93507 1.25689 1.02321 0.95353 0.95560 1.69991 1.36302 1.39908 1.09874 0.85668 0.80800 0.78203 0.77271 1.20067 1.20748 1.19837 1.60535 1.37815 1.02765 1.29849 1.22877 0.95461 0.88306 0.97716 1.23788 0.97136 0.98579 0.99853 1.21643 0.96269 0.93654 0.96470 1.21595 1.01417 0.96632 0.98786 1.21658 0.98078 1.01475 0.97134 1.23153 0.97986 0.96853 0.97392 0.94581 0.92431 0.92317 0.94594 0.91477 0.93064 0.85184 0.92130 0.89580 0.92887 0.91445 0.91203 0.94209 0.92491 0.91826 0.91784 0.92471 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.73 71.98 0.70 -4.55 16 2 C -0.12 -5.96 5.34 30.59 0.16 -5.80 16 3 C 0.23 11.74 1.89 44.17 0.08 11.82 16 4 H -0.03 -1.92 7.80 -2.38 -0.02 -1.94 16 5 C -0.51 -29.55 8.76 25.60 0.22 -29.33 16 6 H 0.05 2.75 7.81 -2.92 -0.02 2.73 16 7 C 0.01 0.50 5.29 84.65 0.45 0.94 16 8 N -0.92 -54.12 11.29 21.45 0.24 -53.88 16 9 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.68 -29.42 6.41 -470.61 -3.02 -32.43 16 14 C 0.07 2.58 3.56 45.44 0.16 2.74 16 15 C -0.15 -4.73 6.82 31.12 0.21 -4.51 16 16 C -0.08 -2.07 1.39 -51.66 -0.07 -2.14 16 17 C -0.13 -3.08 9.07 71.98 0.65 -2.43 16 18 C -0.13 -2.54 9.19 71.98 0.66 -1.88 16 19 C -0.12 -3.59 7.03 31.12 0.22 -3.38 16 20 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 21 H 0.06 1.92 6.51 -2.39 -0.02 1.91 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 3.69 5.94 -2.39 -0.01 3.67 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.33 12.71 5.99 -89.69 -0.54 12.17 16 27 H 0.06 2.72 7.38 -2.39 -0.02 2.71 16 28 H 0.09 2.44 7.65 -2.38 -0.02 2.42 16 29 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.11 7.34 -2.39 -0.02 1.10 16 33 H 0.06 1.12 7.94 -2.39 -0.02 1.11 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 37 H 0.08 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -61.27 290.60 3.18 -58.09 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.48 Total: 19.49 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 3.45 Total: -38.51 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.78 Total: -86.31 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -61.27 3.18 -58.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388858768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.072 kcal (2) G-P(sol) polarization free energy of solvation -61.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds