Wall clock time and date at job start Sun Mar 29 2020 21:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00270 * 2 1 4 4 H 1.48493 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 300.00199 * 3 2 1 6 6 H 1.48508 * 109.46972 * 59.99728 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47419 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47435 * 180.02562 * 10 9 7 12 12 C 1.34928 * 117.00090 * 179.97438 * 11 10 9 13 13 O 1.21666 * 120.00044 * 0.02562 * 12 11 10 14 14 C 1.41558 * 119.99814 * 180.02562 * 12 11 10 15 15 C 1.33874 * 125.96967 * 180.02562 * 14 12 11 16 16 O 1.33757 * 114.13903 * 179.97438 * 15 14 12 17 17 C 1.45610 * 110.37911 * 359.97438 * 16 15 14 18 18 C 1.51450 * 125.97479 * 359.97438 * 14 12 11 19 19 H 0.97000 * 120.00256 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47168 * 60.00418 * 9 7 2 21 21 H 1.09004 * 109.47239 * 300.00055 * 9 7 2 22 22 H 1.09006 * 109.47215 * 59.99683 * 10 9 7 23 23 H 1.09004 * 109.46896 * 300.00187 * 10 9 7 24 24 H 1.07994 * 122.93229 * 359.68901 * 15 14 12 25 25 H 1.09003 * 110.49280 * 241.33662 * 17 16 15 26 26 H 1.08996 * 110.61119 * 118.72339 * 17 16 15 27 27 H 1.09002 * 110.66047 * 298.48213 * 18 14 12 28 28 H 1.09007 * 110.65984 * 61.59110 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0032 12 6 2.2656 -6.0313 0.0036 13 8 3.4806 -5.9676 0.0040 14 6 1.6229 -7.2926 0.0036 15 6 2.2312 -8.4851 0.0044 16 8 1.3925 -9.5270 0.0047 17 6 0.0113 -9.0661 0.0046 18 6 0.1269 -7.5288 0.0037 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8920 22 1 2.8719 -3.6036 0.8927 23 1 2.8719 -3.6051 -0.8873 24 1 3.3054 -8.5962 0.0003 25 1 -0.5057 -9.4097 0.9007 26 1 -0.5079 -9.4100 -0.8899 27 1 -0.3288 -7.1084 0.9002 28 1 -0.3287 -7.1094 -0.8934 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393555734.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:09 Heat of formation + Delta-G solvation = -116.869043 kcal Electronic energy + Delta-G solvation = -13450.166048 eV Core-core repulsion = 10852.826360 eV Total energy + Delta-G solvation = -2597.339688 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.10159 -39.57334 -36.12216 -33.37675 -32.94983 -30.26755 -29.93118 -25.46613 -23.53908 -22.86194 -20.86815 -19.81131 -17.95697 -16.69117 -16.66919 -15.94122 -15.72737 -15.62415 -14.53589 -13.92695 -13.29399 -13.07275 -12.72563 -12.38035 -12.15934 -12.07848 -11.76494 -11.21041 -10.98941 -10.73489 -10.65755 -10.24055 -9.58175 -9.54565 -9.25920 -8.57665 -8.42286 -6.08663 -4.12441 1.18812 2.98516 3.28601 3.30207 3.35253 3.39503 3.51946 4.37076 4.44862 4.61806 4.76866 5.01420 5.27984 5.29447 5.57633 5.70208 5.90218 5.94041 6.15944 6.17344 6.67854 6.73096 7.08808 7.59518 7.65813 7.89725 8.24514 8.36726 8.93486 9.51797 11.03022 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.076035 B = 0.005403 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.163004 B = 5181.376514 C = 5518.343161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.073 3.927 11 O -0.348 6.348 12 C 0.530 3.470 13 O -0.533 6.533 14 C -0.309 4.309 15 C 0.158 3.842 16 O -0.300 6.300 17 C 0.042 3.958 18 C -0.102 4.102 19 H 0.262 0.738 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.196 0.804 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -16.492 0.004 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.000 4.000 11 O -0.264 6.264 12 C 0.378 3.622 13 O -0.427 6.427 14 C -0.312 4.312 15 C 0.090 3.910 16 O -0.210 6.210 17 C -0.032 4.032 18 C -0.139 4.139 19 H 0.072 0.928 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.213 0.787 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.246 -16.562 0.004 16.564 hybrid contribution 0.413 1.255 0.002 1.322 sum 0.168 -15.307 0.006 15.308 Atomic orbital electron populations 1.69986 1.06086 1.26816 1.50071 1.24990 0.94919 0.99389 0.94939 0.86420 0.80081 0.83174 0.77667 1.19585 1.20851 1.20855 1.21046 0.93244 0.90177 1.51792 0.92201 1.19164 0.94141 0.89117 0.98759 1.23201 0.96567 0.79501 1.00750 1.86212 1.41752 1.15428 1.82989 1.18621 0.85285 0.84914 0.73355 1.90846 1.14922 1.88631 1.48314 1.20058 0.96396 0.92280 1.22453 1.23504 0.96478 0.85176 0.85853 1.86709 1.17721 1.31635 1.84961 1.24216 0.80660 0.94463 1.03885 1.21610 0.93184 0.94172 1.04969 0.92812 0.95421 0.95434 0.92653 0.92663 0.78691 0.88656 0.88637 0.88948 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 15 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 9 C 0.03 0.68 5.34 -27.89 -0.15 0.53 15 10 C 0.07 1.70 5.31 37.16 0.20 1.89 15 11 O -0.35 -7.33 9.90 -41.12 -0.41 -7.74 15 12 C 0.53 9.92 7.72 32.00 0.25 10.17 15 13 O -0.53 -11.06 16.49 -19.39 -0.32 -11.38 15 14 C -0.31 -4.40 6.06 -104.52 -0.63 -5.03 15 15 C 0.16 1.81 11.26 29.20 0.33 2.14 15 16 O -0.30 -3.12 11.02 -13.32 -0.15 -3.27 15 17 C 0.04 0.34 8.23 37.77 0.31 0.65 15 18 C -0.10 -1.14 6.80 -26.90 -0.18 -1.33 15 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.06 1.27 8.13 -51.93 -0.42 0.85 15 23 H 0.05 1.27 8.13 -51.93 -0.42 0.85 15 24 H 0.20 1.87 7.99 -52.49 -0.42 1.45 15 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 15 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 LS Contribution 256.00 15.07 3.86 3.86 Total: -1.00 -32.54 256.00 -4.93 -37.48 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -3.34 Total: -4.95 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.29 Total: -4.70 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.87 Total: -22.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.54 -4.93 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393555734.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.392 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds