Wall clock time and date at job start Sun Mar 29 2020 21:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00270 * 2 1 4 4 H 1.48493 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 300.00199 * 3 2 1 6 6 H 1.48508 * 109.46972 * 59.99728 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47419 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47435 * 180.02562 * 10 9 7 12 12 C 1.34928 * 117.00090 * 179.97438 * 11 10 9 13 13 O 1.21666 * 120.00044 * 0.02562 * 12 11 10 14 14 C 1.41558 * 119.99814 * 180.02562 * 12 11 10 15 15 C 1.33874 * 125.96967 * 180.02562 * 14 12 11 16 16 O 1.33757 * 114.13903 * 179.97438 * 15 14 12 17 17 C 1.45610 * 110.37911 * 359.97438 * 16 15 14 18 18 C 1.51450 * 125.97479 * 359.97438 * 14 12 11 19 19 H 0.97000 * 120.00256 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47168 * 60.00418 * 9 7 2 21 21 H 1.09004 * 109.47239 * 300.00055 * 9 7 2 22 22 H 1.09006 * 109.47215 * 59.99683 * 10 9 7 23 23 H 1.09004 * 109.46896 * 300.00187 * 10 9 7 24 24 H 1.07994 * 122.93229 * 359.68901 * 15 14 12 25 25 H 1.09003 * 110.49280 * 241.33662 * 17 16 15 26 26 H 1.08996 * 110.61119 * 118.72339 * 17 16 15 27 27 H 1.09002 * 110.66047 * 298.48213 * 18 14 12 28 28 H 1.09007 * 110.65984 * 61.59110 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0032 12 6 2.2656 -6.0313 0.0036 13 8 3.4806 -5.9676 0.0040 14 6 1.6229 -7.2926 0.0036 15 6 2.2312 -8.4851 0.0044 16 8 1.3925 -9.5270 0.0047 17 6 0.0113 -9.0661 0.0046 18 6 0.1269 -7.5288 0.0037 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8920 22 1 2.8719 -3.6036 0.8927 23 1 2.8719 -3.6051 -0.8873 24 1 3.3054 -8.5962 0.0003 25 1 -0.5057 -9.4097 0.9007 26 1 -0.5079 -9.4100 -0.8899 27 1 -0.3288 -7.1084 0.9002 28 1 -0.3287 -7.1094 -0.8934 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393555734.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:09 Heat of formation + Delta-G solvation = -137.960703 kcal Electronic energy + Delta-G solvation = -13451.080651 eV Core-core repulsion = 10852.826360 eV Total energy + Delta-G solvation = -2598.254291 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.14600 -40.99447 -37.75564 -35.45320 -34.04276 -32.22943 -30.88511 -27.37423 -25.06601 -23.71153 -22.82186 -21.06367 -19.23500 -18.47226 -17.79689 -17.77388 -17.09034 -16.75198 -16.42083 -15.16913 -15.04047 -14.40437 -14.13459 -13.97266 -13.27810 -13.20368 -12.96220 -12.92304 -12.64565 -12.54234 -12.46556 -11.88401 -11.53180 -11.42673 -11.36797 -10.62766 -9.55608 -8.28158 -6.41407 0.06764 1.40383 1.41157 1.55008 1.90452 1.97315 2.25172 2.41990 3.06010 3.53906 3.74161 4.07257 4.12529 4.21775 4.23362 4.34792 4.68236 4.70178 4.91886 4.92948 5.03829 5.25572 5.44906 5.55549 5.74420 5.80925 6.06231 6.71257 6.81627 7.28391 8.84878 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.076035 B = 0.005403 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.163004 B = 5181.376514 C = 5518.343161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.359 6.359 12 C 0.528 3.472 13 O -0.563 6.563 14 C -0.358 4.358 15 C 0.205 3.795 16 O -0.294 6.294 17 C 0.046 3.954 18 C -0.103 4.103 19 H 0.268 0.732 20 H 0.006 0.994 21 H 0.006 0.994 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.216 0.784 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 -17.592 0.004 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.588 4.588 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.016 3.984 11 O -0.276 6.276 12 C 0.380 3.620 13 O -0.459 6.459 14 C -0.361 4.361 15 C 0.135 3.865 16 O -0.203 6.203 17 C -0.027 4.027 18 C -0.140 4.140 19 H 0.077 0.923 20 H 0.024 0.976 21 H 0.024 0.976 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.232 0.768 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.142 -17.701 0.004 17.701 hybrid contribution 0.237 1.416 0.002 1.436 sum 0.380 -16.285 0.006 16.289 Atomic orbital electron populations 1.70103 1.07816 1.28245 1.50450 1.25986 0.95881 1.03458 0.94024 0.85247 0.78852 0.77934 0.78087 1.18672 1.19937 1.19947 1.21414 0.93690 0.91286 1.52438 0.91782 1.18975 0.94253 0.90673 0.96571 1.22710 0.95261 0.79829 1.00587 1.86192 1.42081 1.15541 1.83787 1.19239 0.85136 0.85237 0.72431 1.90817 1.15938 1.88801 1.50317 1.19986 0.98320 0.90963 1.26832 1.23809 0.97358 0.84294 0.81037 1.86737 1.18840 1.31204 1.83476 1.24479 0.79596 0.91952 1.06639 1.21638 0.91254 0.96582 1.04558 0.92296 0.97582 0.97595 0.92750 0.92761 0.76799 0.86016 0.85986 0.89523 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 15 2 C 0.01 0.31 5.46 84.65 0.46 0.77 15 3 Si 0.98 44.27 29.54 68.60 2.03 46.29 15 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.55 -32.09 9.11 25.60 0.23 -31.86 15 8 H 0.06 3.59 7.74 -2.91 -0.02 3.57 15 9 C 0.03 1.81 5.34 29.85 0.16 1.97 15 10 C 0.09 4.31 5.31 71.98 0.38 4.70 15 11 O -0.36 -15.63 9.90 -58.44 -0.58 -16.21 15 12 C 0.53 20.01 7.72 68.64 0.53 20.54 15 13 O -0.56 -23.55 16.49 19.29 0.32 -23.23 15 14 C -0.36 -9.87 6.06 -19.80 -0.12 -9.99 15 15 C 0.20 4.17 11.26 66.83 0.75 4.92 15 16 O -0.29 -5.03 11.02 -70.58 -0.78 -5.81 15 17 C 0.05 0.60 8.23 72.38 0.60 1.20 15 18 C -0.10 -2.18 6.80 30.48 0.21 -1.98 15 19 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 20 H 0.01 0.34 8.14 -2.39 -0.02 0.32 15 21 H 0.01 0.33 8.14 -2.38 -0.02 0.31 15 22 H 0.05 2.58 8.13 -2.38 -0.02 2.56 15 23 H 0.05 2.57 8.13 -2.38 -0.02 2.55 15 24 H 0.22 3.49 7.99 -2.91 -0.02 3.46 15 25 H 0.12 1.03 8.14 -2.39 -0.02 1.02 15 26 H 0.12 1.03 8.14 -2.39 -0.02 1.02 15 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 28 H 0.09 1.88 8.14 -2.38 -0.02 1.86 15 Total: -1.00 -70.78 256.00 5.62 -65.15 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: 1.15 Total: -0.54 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 3.20 Total: -9.72 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.28 Total: -55.93 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.04 Total: -45.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.78 5.62 -65.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393555734.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.808 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds